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Biological systems often exhibit a heterogeneous arrangement of objects, such as assorted nuclear chromatin patterns in a tumor, assorted species of bacteria in biofilms, or assorted aggregates of subcellular particles. Principle Component…

定量方法 · 定量生物学 2017-08-29 David H Nguyen

The principal component analysis (PCA) is a staple statistical and unsupervised machine learning technique in finance. The application of PCA in a financial setting is associated with several technical difficulties, such as numerical…

统计金融 · 定量金融 2021-08-31 Paul Bilokon , David Finkelstein

We propose a robust principal component analysis (RPCA) framework to recover low-rank and sparse matrices from temporal observations. We develop an online version of the batch temporal algorithm in order to process larger datasets or…

机器学习 · 统计学 2022-08-04 Hong-Lan Botterman , Julien Roussel , Thomas Morzadec , Ali Jabbari , Nicolas Brunel

In many scientific disciplines, the features of interest cannot be observed directly, so must instead be inferred from observed behaviour. Latent variable analyses are increasingly employed to systematise these inferences, and Principal…

Principal component analysis (PCA) is a dimensionality reduction method in data analysis that involves diagonalizing the covariance matrix of the dataset. Recently, quantum algorithms have been formulated for PCA based on diagonalizing a…

量子物理 · 物理学 2022-10-26 Max Hunter Gordon , M. Cerezo , Lukasz Cincio , Patrick J. Coles

Principal component analysis (PCA) is a fundamental dimension reduction tool in statistics and machine learning. For large and high-dimensional data, computing the PCA (i.e., the singular vectors corresponding to a number of dominant…

数据结构与算法 · 计算机科学 2017-04-26 Wenjian Yu , Yu Gu , Jian Li , Shenghua Liu , Yaohang Li

Principal component analysis (PCA) is a fundamental tool for analyzing multivariate data. Here the focus is on dimension reduction to the principal subspace, characterized by its projection matrix. The classical principal subspace can be…

统计方法学 · 统计学 2026-05-29 Fabio Centofanti , Mia Hubert , Peter J. Rousseeuw

Principal Component Analysis (PCA) and other multi-variate models are often used in the analysis of "omics" data. These models contain much information which is currently neither easily accessible nor interpretable. Here we present an…

基因组学 · 定量生物学 2021-11-18 Nordine Aouni , Luc Linders , David Robinson , Len Vandelaer , Jessica Wiezorek , Geetesh Gupta , Rachel Cavill

In a longitudinal metabolomics study, multiple metabolites are measured from several observations at many time points. Interest lies in reducing the dimensionality of such data and in highlighting influential metabolites which change over…

应用统计 · 统计学 2013-12-10 Gift Nyamundanda , Isobel Claire Gormley , Lorraine Brennan

In the era of big data, reducing data dimensionality is critical in many areas of science. Widely used Principal Component Analysis (PCA) addresses this problem by computing a low dimensional data embedding that maximally explain variance…

机器学习 · 统计学 2017-02-24 Soheil Feizi , David Tse

Methodologies for multidimensionality reduction aim at discovering low-dimensional manifolds where data ranges. Principal Component Analysis (PCA) is very effective if data have linear structure. But fails in identifying a possible…

数值分析 · 数学 2021-01-14 Alberto García-González , Antonio Huerta , Sergio Zlotnik , Pedro Díez

Principal Component Analysis (PCA) and its nonlinear extension Kernel PCA (KPCA) are widely used across science and industry for data analysis and dimensionality reduction. Modern deep learning tools have achieved great empirical success,…

机器学习 · 计算机科学 2023-02-23 Francesco Tonin , Qinghua Tao , Panagiotis Patrinos , Johan A. K. Suykens

Machine Learning models are prone to fail when test data are different from training data, a situation often encountered in real applications known as distribution shift. While still valid, the training-time knowledge becomes less…

机器学习 · 计算机科学 2022-09-14 Thomas Cordier , Victor Bouvier , Gilles Hénaff , Céline Hudelot

Hypergraphs are important objects to model ternary or higher-order relations of objects, and have a number of applications in analysing many complex datasets occurring in practice. In this work we study a new heat diffusion process in…

数据结构与算法 · 计算机科学 2022-05-06 Peter Macgregor , He Sun

In this work we analyze principle component analysis (PCA) as a deterministic input-output system. We show that the relative information loss induced by reducing the dimensionality of the data after performing the PCA is the same as in…

信息论 · 计算机科学 2013-01-17 Bernhard C. Geiger , Gernot Kubin

Model-independent analysis (MIA) methods are generally useful for analysing complex systems in which relationships between the observables are non-trivial and noise is present. Principle Component Analysis (PCA) is one of MIA methods…

加速器物理 · 物理学 2015-06-17 Y. I. Kim , S. T. Boogert , Y. Honda , A. Lyapin , H. Park , N. Terunuma , T. Tauchi , J. Urakawa

Through a study of multi-gas mixture datasets, we show that in multi-component spectral analysis, the number of functional or non-functional principal components required to retain the essential information is the same as the number of…

机器学习 · 计算机科学 2023-01-02 Yifeng Bie , Shuai You , Xinrui Li , Xuekui Zhang , Tao Lu

Classical machine learning algorithms often face scalability bottlenecks when they are applied to large-scale data. Such algorithms were designed to work with small data that is assumed to fit in the memory of one machine. In this report,…

分布式、并行与集群计算 · 计算机科学 2015-05-14 Tarek Elgamal , Mohamed Hefeeda

In climate studies, detecting spatial patterns that largely deviate from the sample mean still remains a statistical challenge. Although a Principal Component Analysis (PCA), or equivalently a Empirical Orthogonal Functions (EOF)…

统计理论 · 数学 2020-01-29 Alberto Bernacchia , Philippe Naveau

In this paper we present closed-form solutions for efficiently updating the principal components of a set of $n$ points, when $m$ points are added or deleted from the point set. For both operations performed on a discrete point set in…

图形学 · 计算机科学 2009-12-31 Darko Dimitrov , Mathias Holst , Christian Knauer , Klaus Kriegel