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Online availability and diffusion of New Psychoactive Substances (NPS) represent an emerging threat to healthcare systems. In this work, we analyse drugs forums, online shops, and Twitter. By mining the data from these sources, it is…

Drug prescriptions are essential information that must be encoded in electronic medical records. However, much of this information is hidden within free-text reports. This is why the medication extraction task has emerged. To date, most of…

计算与语言 · 计算机科学 2021-10-22 Ali Can Kocabiyikoglu , François Portet , Raheel Qader , Jean-Marc Babouchkine

We propose a novel neural method to extract drug-drug interactions (DDIs) from texts using external drug molecular structure information. We encode textual drug pairs with convolutional neural networks and their molecular pairs with graph…

计算与语言 · 计算机科学 2018-05-16 Masaki Asada , Makoto Miwa , Yutaka Sasaki

Text-based representations of chemicals and proteins can be thought of as unstructured languages codified by humans to describe domain-specific knowledge. Advances in natural language processing (NLP) methodologies in the processing of…

生物大分子 · 定量生物学 2020-02-17 Hakime Öztürk , Arzucan Özgür , Philippe Schwaller , Teodoro Laino , Elif Ozkirimli

Semi-supervised semantic segmentation involves assigning pixel-wise labels to unlabeled images at training time. This is useful in a wide range of real-world applications where collecting pixel-wise labels is not feasible in time or cost.…

计算机视觉与模式识别 · 计算机科学 2023-08-08 Jianfeng Wang , Daniela Massiceti , Xiaolin Hu , Vladimir Pavlovic , Thomas Lukasiewicz

One essential task in information extraction from the medical corpus is drug name recognition. Compared with text sources come from other domains, the medical text is special and has unique characteristics. In addition, the medical text…

计算与语言 · 计算机科学 2016-10-07 Sadikin Mujiono , Mohamad Ivan Fanany , Chan Basaruddin

Repurposing existing drugs to treat new diseases is a cost-effective alternative to de novo drug development, but there are millions of potential drug-disease combinations to be considered with only a small fraction being viable. In silico…

定量方法 · 定量生物学 2025-10-24 Austin Polanco , M. E. J. Newman

Natural language processing (NLP) is an area of artificial intelligence that applies information technologies to process the human language, understand it to a certain degree, and use it in various applications. This area has rapidly…

With the rapid increase of compound databases available in medicinal and material science, there is a growing need for learning representations of molecules in a semi-supervised manner. In this paper, we propose an unsupervised hierarchical…

机器学习 · 统计学 2017-11-30 Hai Nguyen , Shin-ichi Maeda , Kenta Oono

Without any means of interpretation, neural networks that predict molecular properties and bioactivities are merely black boxes. We will unravel these black boxes and will demonstrate approaches to understand the learned representations…

机器学习 · 计算机科学 2019-03-19 Kristina Preuer , Günter Klambauer , Friedrich Rippmann , Sepp Hochreiter , Thomas Unterthiner

Debate portals and similar web platforms constitute one of the main text sources in computational argumentation research and its applications. While the corpora built upon these sources are rich of argumentatively relevant content and…

计算与语言 · 计算机科学 2020-11-04 Jonas Dorsch , Henning Wachsmuth

Nonmedical opioid use is an urgent public health challenge, with far-reaching clinical and social consequences that are often underreported in traditional healthcare settings. Social media platforms, where individuals candidly share…

计算与语言 · 计算机科学 2025-08-28 Sumon Kanti Dey , Jeanne M. Powell , Azra Ismail , Jeanmarie Perrone , Abeed Sarker

Identifying and extracting data elements such as study descriptors in publication full texts is a critical yet manual and labor-intensive step required in a number of tasks. In this paper we address the question of identifying data elements…

Social media is an useful platform to share health-related information due to its vast reach. This makes it a good candidate for public-health monitoring tasks, specifically for pharmacovigilance. We study the problem of extraction of…

信息检索 · 计算机科学 2017-09-07 Shashank Gupta , Sachin Pawar , Nitin Ramrakhiyani , Girish Palshikar , Vasudeva Varma

How to utilize the pseudo labels has always been a research hotspot in machine learning. However, most methods use pseudo labels as supervised training, and lack of valid assessing for their accuracy. Moreover, applications of pseudo labels…

机器学习 · 计算机科学 2023-10-03 Xinjie Shen , Danyang Wu , Jitao Lu , Junjie Liang , Jin Xu , Feiping Nie

This paper addresses the problem of extracting keyphrases from scientific articles and categorizing them as corresponding to a task, process, or material. We cast the problem as sequence tagging and introduce semi-supervised methods to a…

计算与语言 · 计算机科学 2017-08-22 Yi Luan , Mari Ostendorf , Hannaneh Hajishirzi

In recent years, text summarization methods have attracted much attention again thanks to the researches on neural network models. Most of the current text summarization methods based on neural network models are supervised methods which…

计算与语言 · 计算机科学 2024-01-25 Dehao Tao , Yingzhu Xiong , Zhongliang Yang , Yongfeng Huang

Substance use disorders (SUDs) are a growing concern globally, necessitating enhanced understanding of the problem and its trends through data-driven research. Social media are unique and important sources of information about SUDs,…

计算与语言 · 计算机科学 2024-05-13 Yao Ge , Sudeshna Das , Karen O'Connor , Mohammed Ali Al-Garadi , Graciela Gonzalez-Hernandez , Abeed Sarker

Extracting relations across large text spans has been relatively underexplored in NLP, but it is particularly important for high-value domains such as biomedicine, where obtaining high recall of the latest findings is crucial for practical…

计算与语言 · 计算机科学 2021-09-14 Sheng Zhang , Cliff Wong , Naoto Usuyama , Sarthak Jain , Tristan Naumann , Hoifung Poon

Text summarization has been one of the most challenging areas of research in NLP. Much effort has been made to overcome this challenge by using either the abstractive or extractive methods. Extractive methods are more popular, due to their…

计算与语言 · 计算机科学 2019-09-10 Hosein Rezaei , Seyed Amid Moeinzadeh , Azar Shahgholian , Mohamad Saraee
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