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Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…

种群与进化 · 定量生物学 2015-01-30 Stephen J. Willson

The representation of a dynamic ordered set of $n$ integer keys drawn from a universe of size $m$ is a fundamental data structuring problem. Many solutions to this problem achieve optimal time but take polynomial space, therefore preserving…

数据结构与算法 · 计算机科学 2020-03-27 Giulio Ermanno Pibiri , Rossano Venturini

For every fixed $d \in \mathbb{N}$, we design a data structure that represents a binary $n \times n$ matrix that is $d$-twin-ordered. The data structure occupies $O_d(n)$ bits, which is the least one could hope for, and can be queried for…

数据结构与算法 · 计算机科学 2021-10-18 Michał Pilipczuk , Marek Sokołowski , Anna Zych-Pawlewicz

Let $\kappa(s,t)$ denote the maximum number of internally disjoint $st$-paths in an undirected graph $G$. We consider designing a compact data structure that answers $k$-bounded node connectivity queries: given $s,t \in V$ return…

数据结构与算法 · 计算机科学 2023-06-27 Zeev Nutov

Temporal graphs represent interactions between entities over time. Deciding whether entities can reach each other through temporal paths is useful for various applications such as in communication networks and epidemiology. Previous works…

数据结构与算法 · 计算机科学 2023-08-24 Luiz Fernando Afra Brito , Marcelo Keese Albertini , Bruno Augusto Nassif Travençolo , Gonzalo Navarro

We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…

组合数学 · 数学 2017-02-28 Reinhard Diestel

The paper presents a technique for constructing noisy data structures called a walking tree. We apply it for a Red-Black tree (an implementation of a Self-Balanced Binary Search Tree) and a segment tree. We obtain the same complexity of the…

量子物理 · 物理学 2023-05-16 Kamil Khadiev , Nikita Savelyev , Mansur Ziatdinov , Denis Melnikov

Given a graph $G=(V,E)$ where each vertex is assigned a color from the set $C=\{c_1, c_2, .., c_\sigma\}$. In the (approximate) nearest colored node problem, we want to query, given $v \in V$ and $c \in C$, for the (approximate) distance…

数据结构与算法 · 计算机科学 2019-01-14 Maximilian Probst

The sorting problem is one of the most relevant problems in computer science. Within the scope of modern computer science it has been studied for more than 70 years. In spite of these facts, new sorting algorithms have been developed in…

数据结构与算法 · 计算机科学 2014-11-04 Luis A. A. Meira , Rogério H. B. de Lima

We present an improved wavelet tree construction algorithm and discuss its applications to a number of rank/select problems for integer keys and strings. Given a string of length n over an alphabet of size $\sigma\leq n$, our method builds…

数据结构与算法 · 计算机科学 2015-05-18 Maxim Babenko , Paweł Gawrychowski , Tomasz Kociumaka , Tatiana Starikovskaya

The binary indexed tree, or Fenwick tree, is a data structure that can efficiently update values and calculate prefix sums in an array. It allows both of these operations to be performed in $O(\log_2 N)$ time. Here we present a novel data…

数据结构与算法 · 计算机科学 2024-03-08 Brent Harrison , Jason Necaise , Andrew Projansky , James D. Whitfield

We introduce top trees as a design of a new simpler interface for data structures maintaining information in a fully-dynamic forest. We demonstrate how easy and versatile they are to use on a host of different applications. For example, we…

数据结构与算法 · 计算机科学 2007-05-23 Stephen Alstrup , Jacob Holm , Kristian de Lichtenberg , Mikkel Thorup

We find precise asymptotic estimates for the number of planar maps and graphs with a condition on the minimum degree, and properties of random graphs from these classes. In particular we show that the size of the largest tree attached to…

组合数学 · 数学 2018-06-12 Marc Noy , Lander Ramos

Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

数据结构与算法 · 计算机科学 2016-08-03 Paweł Gawrychowski , Tomasz Kociumaka

We consider preprocessing a set $S$ of $n$ points in convex position in the plane into a data structure supporting queries of the following form: given a point $q$ and a directed line $\ell$ in the plane, report the point of $S$ that is…

A combinatorial Gray code for a set of combinatorial objects is a sequence of all combinatorial objects in the set so that each object is derived from the preceding object by changing a small part. In this paper we design a Gray code for…

离散数学 · 计算机科学 2022-08-01 Shin-ichi Nakano

In this paper, we present a new data structure called the packed compact trie (packed c-trie) which stores a set $S$ of $k$ strings of total length $n$ in $n \log\sigma + O(k \log n)$ bits of space and supports fast pattern matching queries…

数据结构与算法 · 计算机科学 2017-10-11 Takuya Takagi , Shunsuke Inenaga , Kunihiko Sadakane , Hiroki Arimura

Many common sequential data sources, such as source code and natural language, have a natural tree-structured representation. These trees can be generated by fitting a sequence to a grammar, yielding a hierarchical ordering of the tokens in…

机器学习 · 计算机科学 2019-08-02 Jacob Harer , Chris Reale , Peter Chin

Colouring sparse graphs under various restrictions is a theoretical problem of significant practical relevance. Here we consider the problem of maximizing the number of different colours available at the nodes and their neighbourhoods,…

数据结构与算法 · 计算机科学 2009-11-13 K. Y. Michael Wong , David Saad

We propose different methods for alternative representation and visual augmentation of sheet music that help users gain an overview of general structure, repeating patterns, and the similarity of segments. To this end, we explored mapping…

人机交互 · 计算机科学 2023-08-14 Frank Heyen , Quynh Quang Ngo , Michael Sedlmair