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Let $\mbox{interval} + k v$, $\mbox{interval} + k e$, and $\mbox{interval} - k e$ denote the classes of graphs that can be obtained from some interval graph by adding $k$ vertices, adding $k$ edges, and deleting $k$ edges, respectively.…

We unify several seemingly different graph and digraph classes under one umbrella. These classes are all broadly speaking different generalizations of interval graphs, and include, in addition to interval graphs, also adjusted interval…

We prove a characterization of all polynomial-time computable queries on the class of interval graphs by sentences of fixed-point logic with counting. More precisely, it is shown that on the class of unordered interval graphs, any query is…

The vertices of an interval graph represent intervals over a real line where overlapping intervals denote that their corresponding vertices are adjacent. This implies that the vertices are measurable by a metric and there exists a linear…

A graph $G$ is a pairwise compatibility graph (PCG) if there exists an edge-weighted tree and an interval $I$, such that each leaf of the tree is a vertex of the graph, and there is an edge $\{ x, y \}$ in $G$ if and only if the weight of…

We present the Temporal Graph Benchmark (TGB), a collection of challenging and diverse benchmark datasets for realistic, reproducible, and robust evaluation of machine learning models on temporal graphs. TGB datasets are of large scale,…

A simple-triangle graph (also known as a PI graph) is the intersection graph of a family of triangles defined by a point on a horizontal line and an interval on another horizontal line. The recognition problem for simple-triangle graphs was…

Block graphs are graphs in which every block (biconnected component) is a clique. A graph $G=(V,E)$ is said to be an (unpartitioned) $k$-probe block graph if there exist $k$ independent sets $N_i\subseteq V$, $1\le i\le k$, such that the…

Peptides offer great biomedical potential and serve as promising drug candidates. Currently, the majority of approved peptide drugs are directly derived from well-explored natural human peptides. It is quite necessary to utilize advanced…

Interactions between two entities often occur at specific timestamps, which can be modeled as a temporal graph. Exploring the relationships between vertices based on temporal paths is one of the fundamental tasks. In this paper, we conduct…

In this thesis, which is supervised by Dr. David Penman, we examine random interval graphs. Recall that such a graph is defined by letting $X_{1},\ldots X_{n},Y_{1},\ldots Y_{n}$ be $2n$ independent random variables, with uniform…

Temporal graphs are graphs whose edges are labelled with times at which they are active. Their time-sensitivity provides a useful model of real networks, but renders many problems studied on temporal graphs more computationally complex than…

We study graph classes modeled by families of non-crossing (NC) connected sets. Two classic graph classes in this context are disk graphs and proper interval graphs. We focus on the cases when the sets are paths and the host is a tree…

Pairwise compatibility graphs (PCGs) with non-negative integer edge weights recently have been used to describe rare evolutionary events and scenarios with horizontal gene transfer. Here we consider the case that vertices are separated by…

We initiate the study of a new parameterization of graph problems. In a multiple interval representation of a graph, each vertex is associated to at least one interval of the real line, with an edge between two vertices if and only if an…

Temporal Graph Neural Networks (TGNN) have the ability to capture both the graph topology and dynamic dependencies of interactions within a graph over time. There has been a growing need to explain the predictions of TGNN models due to the…

An $H$-graph is an intersection graph of connected subgraphs of a suitable subdivision of a fixed graph $H$. Many important classes of graphs, including interval graphs, circular-arc graphs, and chordal graphs, can be expressed as…

Temporal graphs have been recently introduced to model changes to a given network that occur throughout a fixed period of time. The Temporal $\Delta$ Clique problem, that generalizes the well known Clique problem to temporal graphs, has…

A proper edge $t$-coloring of a graph $G$ is a coloring of edges of $G$ with colors $1,2,...,t$ such that each of $t$ colors is used, and adjacent edges are colored differently. The set of colors of edges incident with a vertex $x$ of $G$…

The \emph{thinness} of a graph is a width parameter that generalizes some properties of interval graphs, which are exactly the graphs of thinness one. Graphs with thinness at most two include, for example, bipartite convex graphs. Many…