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Using Markov chain Monte Carlo to sample from posterior distributions was the key innovation which made Bayesian data analysis practical. Notoriously, however, MCMC is hard to tune, hard to diagnose, and hard to parallelize. This…

统计计算 · 统计学 2022-03-18 Cosma Rohilla Shalizi

This paper presents a Markov chain Monte Carlo method to generate approximate posterior samples in retrospective multiple changepoint problems where the number of changes is not known in advance. The method uses conjugate models whereby the…

统计计算 · 统计学 2010-11-15 Jason Wyse , Nial Friel

Approximate Bayesian computation (ABC) is a simulation-based likelihood-free method applicable to both model selection and parameter estimation. ABC parameter estimation requires the ability to forward simulate datasets from a candidate…

统计方法学 · 统计学 2020-11-10 Louis Raynal , Sixing Chen , Antonietta Mira , Jukka-Pekka Onnela

Metrics of model goodness-of-fit, model comparison, and model parameter estimation are the main categories of statistical problems in science. Bayesian and frequentist methods that address these questions often rely on a likelihood…

数据分析、统计与概率 · 物理学 2019-06-26 Carlos A. Argüelles , Austin Schneider , Tianlu Yuan

A key quantity of interest in Bayesian inference are expectations of functions with respect to a posterior distribution. Markov Chain Monte Carlo is a fundamental tool to consistently compute these expectations via averaging samples drawn…

机器学习 · 统计学 2015-02-10 Heiko Strathmann , Dino Sejdinovic , Mark Girolami

In the following article we provide an exposition of exact computational methods to perform parameter inference from partially observed network models. In particular, we consider the duplication attachment (DA) model which has a likelihood…

统计计算 · 统计学 2013-06-20 Junshan Wang , Ajay Jasra , Maria De Iorio

For nearly any challenging scientific problem evaluation of the likelihood is problematic if not impossible. Approximate Bayesian computation (ABC) allows us to employ the whole Bayesian formalism to problems where we can use simulations…

统计计算 · 统计学 2011-07-04 Chris Barnes , Sarah Filippi , Michael P. H. Stumpf , Thomas Thorne

To investigate intervention effects on rare events, meta-analysis techniques are commonly applied in order to assess the accumulated evidence. When it comes to adverse effects in clinical trials, these are often most adequately handled…

统计方法学 · 统计学 2026-04-03 Christian Röver , Qiong Wu , Anja Loos , Tim Friede

Approximate Bayesian computation (ABC) is a well-established family of Monte Carlo methods for performing approximate Bayesian inference in the case where an ``implicit'' model is used for the data: when the data model can be simulated, but…

统计计算 · 统计学 2022-11-07 Ivis Kerama , Thomas Thorne , Richard G. Everitt

Contact tracing data collected from disease outbreaks has received relatively little attention in the epidemic modelling literature because it is thought to be unreliable: infection sources might be wrongly attributed, or data might be…

统计方法学 · 统计学 2012-03-16 Chris Jewell , Gareth Roberts

A review of Bayesian restoration of digital images based on Monte Carlo techniques is presented. The topics covered include Likelihood, Prior and Posterior distributions, Poisson, Binay symmetric channel, and Gaussian channel models of…

计算机视觉与模式识别 · 计算机科学 2007-05-23 K. P. N. Murthy , M. Janani , B. Shenbga Priya

Markov chain Monte Carlo methods are often deemed too computationally intensive to be of any practical use for big data applications, and in particular for inference on datasets containing a large number $n$ of individual data points, also…

统计方法学 · 统计学 2015-05-13 Rémi Bardenet , Arnaud Doucet , Chris Holmes

Markov chain Monte Calro methods (MCMC) are commonly used in Bayesian statistics. In the last twenty years, many results have been established for the calculation of the exact convergence rate of MCMC methods. We introduce another rate of…

统计理论 · 数学 2014-02-17 Kengo Kamatani

Bayesian inference methods are useful in infectious diseases modeling due to their capability to propagate uncertainty, manage sparse data, incorporate latent structures, and address high-dimensional parameter spaces. However, parameter…

统计方法学 · 统计学 2025-04-29 Xiahui Li , Fergus Chadwick , Ben Swallow

In this paper, we present a method for computing the marginal likelihood, also known as the model likelihood or Bayesian evidence, from Markov Chain Monte Carlo (MCMC), or other sampled posterior distributions. In order to do this, one…

Many scientifically well-motivated statistical models in natural, engineering and environmental sciences are specified through a generative process, but in some cases it may not be possible to write down a likelihood for these models…

统计计算 · 统计学 2018-10-10 Sanjay Chaudhuri , Subhro Ghosh , David J. Nott , Kim Cuc Pham

Estimating model parameters of a general family of cure models is always a challenging task mainly due to flatness and multimodality of the likelihood function. In this work, we propose a fully Bayesian approach in order to overcome these…

统计方法学 · 统计学 2024-08-20 Panagiotis Papastamoulis , Fotios Milienos

We consider a continuous-time Markov chain model of SIR disease dynamics with two levels of mixing. For this so-called stochastic households model, we provide two methods for inferring the model parameters---governing within-household…

种群与进化 · 定量生物学 2018-02-07 James N. Walker , Joshua V. Ross , Andrew J. Black

Recent outbreaks of monkeypox and Ebola, and worrying waves of COVID-19, influenza and respiratory syncytial virus, have all led to a sharp increase in the use of epidemiological models to estimate key epidemiological parameters. The…

种群与进化 · 定量生物学 2023-12-01 B. K. M. Case , Jean-Gabriel Young , Laurent Hébert-Dufresne

Bayesian nonparametric inferential procedures based on Markov chain Monte Carlo marginal methods typically yield point estimates in the form of posterior expectations. Though very useful and easy to implement in a variety of statistical…

统计理论 · 数学 2016-05-04 Julyan Arbel , Antonio Lijoi , Bernardo Nipoti