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A new synthesis scheme is proposed to generate a random vector with prescribed joint density that induces a (latent) Gaussian tree structure. The quality of synthesis is shown by vanishing total variation distance between the synthesized…

信息论 · 计算机科学 2017-05-09 Ali Moharrer , Shuangqing Wei , George T. Amariucai , Jing Deng

We consider a marking procedure of the vertices of a tree where each vertex is marked independently from the others with a probability that depends only on its out-degree. We prove that a critical Galton-Watson tree conditioned on having a…

概率论 · 数学 2016-04-27 Romain Abraham , Aymen Bouaziz , Jean-François Delmas

In this paper we address the problem of testing whether two observed trees $(t,t')$ are sampled either independently or from a joint distribution under which they are correlated. This problem, which we refer to as correlation detection in…

统计理论 · 数学 2024-09-06 Luca Ganassali , Laurent Massoulié , Guilhem Semerjian

As an alternative to parsimony analyses, stochastic models have been proposed (Lewis, 2001), (Nylander, et al., 2004) for morphological characters, so that maximum likelihood or Bayesian analyses may be used for phylogenetic inference. A…

种群与进化 · 定量生物学 2009-12-20 Elizabeth S. Allman , Mark T. Holder , John A. Rhodes

In information theory, one major goal is to find useful functions that summarize the amount of information contained in the interaction of several random variables. Specifically, one can ask how the classical Shannon entropy, mutual…

信息论 · 计算机科学 2025-02-14 Leon Lang , Pierre Baudot , Rick Quax , Patrick Forré

The Cholesky decomposition is a fundamental tool for solving linear systems with symmetric and positive definite matrices which are ubiquitous in linear algebra, optimization, and machine learning. Its numerical stability can be improved by…

机器学习 · 计算机科学 2025-07-29 Filip de Roos , Fabio Muratore

Generalised degrees provide a natural bridge between local and global topological properties of networks. We define the generalised degree to be the number of neighbours of a node within one and two steps respectively. Tailored random graph…

无序系统与神经网络 · 物理学 2013-09-17 Ekaterina S. Roberts , Anthonius C. C. Coolen

Inference of species networks from genomic data under the Network Multispecies Coalescent Model is currently severely limited by heavy computational demands. It also remains unclear how complicated networks can be for consistent inference…

种群与进化 · 定量生物学 2022-05-10 Elizabeth S. Allman , Hector Baños , Jonathan D. Mitchell , John A. Rhodes

The Cherenkov Telescope Array (CTA) will be the world's leading ground-based gamma-ray observatory allowing us to study very high energy phenomena in the Universe. CTA will produce huge data sets, of the order of petabytes, and the…

天体物理仪器与方法 · 物理学 2018-10-02 S. Mangano , C. Delgado , M. Bernardos , M. Lallena , J. J. Rodríguez Vázquez

A classical result of Koml\'os, S\'ark\"ozy and Szemer\'edi states that every $n$-vertex graph with minimum degree at least $(1/2+ o(1))n$ contains every $n$-vertex tree with maximum degree $O(n/\log{n})$ as a subgraph, and the bounds on…

组合数学 · 数学 2018-03-14 Felix Joos , Jaehoon Kim

This work describes an outlier detection procedure (named "OutlierTree") loosely based on the GritBot software developed by RuleQuest research, which works by evaluating and following supervised decision tree splits on variables, in whose…

机器学习 · 统计学 2020-01-06 David Cortes

An important problem in geometric computing is defining and computing similarity between two geometric shapes, e.g. point sets, curves and surfaces, etc. Important geometric and topological information of many shapes can be captured by…

计算几何 · 计算机科学 2015-08-17 Hangjun Xu

Chern-Simons gauge theory, since its inception as a topological quantum field theory, has proved to be a rich source of understanding for knot invariants. In this work the theory is used to explore the definition of the expectation value of…

高能物理 - 理论 · 物理学 2015-06-26 Seth A. Major

Many network analysis and graph learning techniques are based on models of random walks which require to infer transition matrices that formalize the underlying stochastic process in an observed graph. For weighted graphs, it is common to…

统计方法学 · 统计学 2022-10-28 Vincenzo Perri , Luka V. Petrović , Ingo Scholtes

Consider a drawing of a graph $G$ in the plane such that crossing edges are coloured differently. The minimum number of colours, taken over all drawings of $G$, is the classical graph parameter "thickness". By restricting the edges to be…

组合数学 · 数学 2015-06-17 Vida Dujmović , David R. Wood

Interpretable Graph Neural Networks (GNNs) aim to reveal the underlying reasoning behind model predictions, attributing their decisions to specific subgraphs that are informative. However, existing subgraph-based interpretable methods…

机器学习 · 计算机科学 2025-05-02 Jie Yang , Yuwen Wang , Kaixuan Chen , Tongya Zheng , Yihe Zhou , Zhenbang Xiao , Ji Cao , Mingli Song , Shunyu Liu

The general Markov plus invariable sites (GM+I) model of biological sequence evolution is a two-class model in which an unknown proportion of sites are not allowed to change, while the remainder undergo substitutions according to a Markov…

种群与进化 · 定量生物学 2011-11-10 Elizabeth S. Allman , John A. Rhodes

Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…

概率论 · 数学 2023-01-10 François Bienvenu , Amaury Lambert , Mike Steel

We study graph estimation and density estimation in high dimensions, using a family of density estimators based on forest structured undirected graphical models. For density estimation, we do not assume the true distribution corresponds to…

机器学习 · 统计学 2010-10-21 Han Liu , Min Xu , Haijie Gu , Anupam Gupta , John Lafferty , Larry Wasserman

A general theory of stochastic decision forests is developed to bridge two concepts of information flow: decision trees and refined partitions on the one side, filtrations from probability theory on the other. Instead of the traditional…

理论经济学 · 经济学 2024-11-12 E. Emanuel Rapsch