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We analyze a microscopic RNA model, which includes two widely used models as limiting cases, namely it contains terms for bond as well as for stacking energies. We numerically investigate possible changes in the qualitative and quantitative…

定量方法 · 定量生物学 2009-11-10 Bernd Burghardt , Alexander K. Hartmann

Epidemiological models describe the spread of an infectious disease within a population. They capture microscopic details on how the disease is passed on among individuals in various different ways, while making predictions about the state…

种群与进化 · 定量生物学 2024-02-27 Stefan Hohenegger , Francesco Sannino

We use experiments to study the dynamics of the healing of a blister, a localized bump in a thin elastic layer that is adhered to a soft substrate everywhere except at the bump. We create a blister by gently placing a glass cover slip on a…

软凝聚态物质 · 物理学 2014-02-04 Jonathan E. Longley , L. Mahadevan , Manoj K. Chaudhury

Density dependence is important in the ecology and evolution of microbial and cancer cells. Typically, we can only measure net growth rates, but the underlying density-dependent mechanisms that give rise to the observed dynamics can…

种群与进化 · 定量生物学 2025-06-04 Linh Huynh , Jacob G. Scott , Peter J. Thomas

This note presents a simulation method for investigating the relationship between porosity and particle size distribution in porous media characterization. The method simulates particle packing based on particle size distributions,…

软凝聚态物质 · 物理学 2024-09-25 Yuhe Wang

Phase separation is the thermodynamic process that explains how droplets form in multicomponent fluids. These droplets can provide controlled compartments to localize chemical reactions, and reactions can also affect the droplets' dynamics.…

软凝聚态物质 · 物理学 2022-09-02 David Zwicker

The individual contributions of pH and chloride concentration to the corrosion kinetics of bioabsorbable magnesium (Mg) alloys remain unresolved despite their significant roles as driving factors in Mg corrosion. This study demonstrates and…

医学物理 · 物理学 2025-03-21 S. Kovacevic , W. Ali , T. K. Mandal , E. Martínez-Pañeda , J. Llorca

Pimple is one of the most common skin diseases for humans. The mechanical modeling of pimple growth is very limited. A finite element model is developed to quantify the deformation field with the expansion of follicle, and then the…

医学物理 · 物理学 2017-04-07 Xiangbiao Liao , Xiaobin Deng , LiangLiang Zhu , Feng Hao , Hang Xiao , Xiaoyang Shi , Xi Chen

A probabilistic method for solving time-dependent load-transfer models of fracture is developed. It is applicable to any rule of load redistribution, i.e, local, hierarchical, etc. In the new method, the fluctuations are generated during…

统计力学 · 物理学 2019-08-17 J. B. Gomez , Y. Moreno , A. F. Pacheco

We systematically study and compare damage spreading for random Boolean and threshold networks under small external perturbations (damage), a problem which is relevant to many biological networks. We identify a new characteristic…

无序系统与神经网络 · 物理学 2008-04-30 Thimo Rohlf , Natali Gulbahce , Christof Teuscher

We review the evolution of some statistical and thermodynamical quantities measured in difference sizes of high-energy collisions at different energies. We differentiate between intensive and extensive quantities and discuss the importance…

高能物理 - 唯象学 · 物理学 2013-10-03 A. Tawfik

Epidemiological processes are studied within a recently proposed hierarchical network model using the susceptible-infected-refractory dynamics of an epidemic. Within the network model, a population may be characterized by $H$ independent…

无序系统与神经网络 · 物理学 2008-06-24 Dafang Zheng , P. M. Hui , Steffen Trimper , Bo Zheng

In the last decades, the interest to understand the connection between brain and body has grown notably. For example, in psychoneuroimmunology many studies associate stress, arising from many different sources and situations, to changes in…

定量方法 · 定量生物学 2022-07-27 Maria Elena Gonzalez Herrero , Christian Kuehn

In medicolegal situations, the consequences of a stabbing incident are described in terms that are qualitative without being quantitative. Here, the mechanical variables involved in knife-tissue penetration events are used to determine the…

The electrostatic interaction of metal nanoparticles with viruses is attracting great interest due to their antiviral activity and their role in enhancing the detection of viruses at ultra-low concentrations. We model the MS2 virus devoid…

软凝聚态物质 · 物理学 2019-06-26 Anh D. Phan , Trinh X. Hoang

Local changes in pH are known to significantly alter the state and activity of proteins and in particular enzymes. pH variations induced by pulses propagating along soft interfaces (e.g. the lipid bilayer) would therefore constitute an…

生物物理 · 物理学 2015-03-18 Bernhard Fichtl , Shamit Shrivastava , Matthias F. Schneider

Understanding how growth induces form is a longstanding biological question. Many studies concentrated on the shapes of plant cells, fungi or bacteria. Some others have shown the importance of the mechanical properties of bacterial walls…

生物物理 · 物理学 2007-05-23 Arezki Boudaoud

The notion of causal effect is fundamental across many scientific disciplines. Traditionally, quantitative researchers have studied causal effects at the level of variables; for example, how a certain drug dose (W) causally affects a…

统计方法学 · 统计学 2026-04-07 Junhyung Park , Yuqing Zhou

Epithelization, the process whereby an epithelium covers a cell-free surface, is not only central to wound healing but also pivotal in embryonic morphogenesis, regeneration, and cancer. In the context of wound healing, the epithelization…

细胞行为 · 定量生物学 2014-02-21 Olivier Cochet-Escartin , Jonas Ranft , Pascal Silberzan , Philippe Marcq

Despite there being an infinite variety of types of flow, most rheological studies focus on a single type such as simple shear. Using discrete element simulations, we explore bulk granular systems in a wide range of flow types at large…

软凝聚态物质 · 物理学 2022-01-04 Joel T. Clemmer , Ishan Srivastava , Gary S. Grest , Jeremy B. Lechman