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Data leakage remains a recurrent source of optimistic bias in biomedical machine learning studies. Standard row-wise cross-validation and globally estimated preprocessing steps are often inappropriate for data with repeated measurements,…

统计计算 · 统计学 2026-04-14 Selçuk Korkmaz

MPAgenomics, standing for multi-patients analysis (MPA) of genomic markers, is an R-package devoted to: (i) efficient segmentation, and (ii) genomic marker selection from multi-patient copy number and SNP data profiles. It provides wrappers…

定量方法 · 定量生物学 2014-01-21 Quentin Grimonprez , Alain Celisse , Meyling Cheok , Martin Figeac , Guillemette Marot

Despite significant recent advances in probabilistic meta-learning, it is common for practitioners to avoid using deep learning models due to a comparative lack of interpretability. Instead, many practitioners simply use non-meta-models…

机器学习 · 统计学 2025-04-25 Tommy Rochussen , Vincent Fortuin

Gaussian Process (GP) regression has seen widespread use in robotics due to its generality, simplicity of use, and the utility of Bayesian predictions. The predominant implementation of GP regression is a nonparameteric kernel-based…

机器人学 · 计算机科学 2018-11-01 James Harrison , Apoorva Sharma , Marco Pavone

In this article, the JAGS software program is systematically introduced to fit common Bayesian cognitive diagnosis models (CDMs), including the deterministic inputs, noisy "and" gate (DINA) model, the deterministic inputs, noisy "or" gate…

统计计算 · 统计学 2019-02-15 Peida Zhan , Hong Jiao , Kaiwen Man

Bayesian methodologies prioritising accurate associations above sparsity in Gaussian graphical model (GGM) estimation remain relatively scarce in scientific literature. It is well accepted that the $\ell_2$ penalty enjoys a smaller…

统计方法学 · 统计学 2022-10-31 J. Smith , M. Arashi , A. Bekker

Gaussian mixtures are commonly used for modeling heavy-tailed error distributions in robust linear regression. Combining the likelihood of a multivariate robust linear regression model with a standard improper prior distribution yields an…

统计理论 · 数学 2023-01-05 Haoxiang Li , Qian Qin , Galin L. Jones

To validate the safety of automated vehicles (AV), scenario-based testing aims to systematically describe driving scenarios an AV might encounter. In this process, continuous inputs such as velocities result in an infinite number of…

机器学习 · 计算机科学 2022-12-08 Max Winkelmann , Mike Kohlhoff , Hadj Hamma Tadjine , Steffen Müller

Meta-analysis is a statistical method used in evidence synthesis for combining, analyzing and summarizing studies that have the same target endpoint and aims to derive a pooled quantitative estimate using fixed and random effects models or…

统计方法学 · 统计学 2022-04-25 Ivette Raices Cruz , Matthias C. M. Troffaes , Johan Lindström , Ullrika Sahlin

We present and describe the GPFDA package for R. The package provides flexible functionalities for dealing with Gaussian process regression (GPR) models for functional data. Multivariate functional data, functional data with…

统计计算 · 统计学 2021-02-02 Evandro Konzen , Yafeng Cheng , Jian Qing Shi

Variance parameters in additive models are typically assigned independent priors that do not account for model structure. We present a new framework for prior selection based on a hierarchical decomposition of the total variance along a…

Recent advances in the field of meta-learning have tackled domains consisting of large numbers of small ("few-shot") supervised learning tasks. Meta-learning algorithms must be able to rapidly adapt to any individual few-shot task, fitting…

机器学习 · 计算机科学 2021-10-22 Vivek Myers , Nikhil Sardana

Existing medical RAG systems mainly leverage knowledge from medical knowledge bases, neglecting the crucial role of experiential knowledge derived from similar patient cases -- a key component of human clinical reasoning. To bridge this…

计算与语言 · 计算机科学 2025-05-27 Yuxing Lu , Gecheng Fu , Wei Wu , Xukai Zhao , Sin Yee Goi , Jinzhuo Wang

Multilevel compositional data, such as data sampled over time that are non-negative and sum to a constant value, are common in various fields. However, there is currently no software specifically built to model compositional data in a…

统计方法学 · 统计学 2025-09-23 Flora Le , Dorothea Dumuid , Tyman E. Stanford , Joshua F. Wiley

We describe in detail how to perform health economic cost-effectiveness analyses (CEA) using the R package $\textbf{BCEA}$ (Bayesian Cost-Effectiveness Analysis). CEA consist of analytic approaches for combining costs and health…

统计计算 · 统计学 2022-03-21 Nathan Green , Anna Heath , Gianluca Baio

Statistical models serve as the cornerstone for hypothesis testing in empirical studies. This paper introduces a new cross-platform Python-based package designed to utilise different likelihood prescriptions via a flexible plug-in system.…

高能物理 - 唯象学 · 物理学 2024-01-29 Jack Y. Araz

Conducting research often involves managing multiple disconnected tools for survey design, data collection, response analysis, and report generation, leading to inefficiencies, increased error risks, and challenges in ensuring…

统计计算 · 统计学 2025-08-11 Clievins Selva

We introduce EncouRAGe, a comprehensive Python framework designed to streamline the development and evaluation of Retrieval-Augmented Generation (RAG) systems using Large Language Models (LLMs) and Embedding Models. EncouRAGe comprises five…

计算与语言 · 计算机科学 2025-11-10 Jan Strich , Adeline Scharfenberg , Chris Biemann , Martin Semmann

Retrieval-augmented generation (RAG) combines document retrieval with large language models to produce responses grounded in external evidence. While several R packages support core components of RAG workflows, integrated evaluation of RAG…

统计计算 · 统计学 2026-04-28 Muhammad Aimal Rehman , Zhili Lu , Chi-Kuang Yeh

Meta-analysis is a systematic approach for understanding a phenomenon by analyzing the results of many previously published experimental studies. It is central to deriving conclusions about the summary effect of treatments and interventions…

计算机与社会 · 计算机科学 2021-04-13 Lu Cheng , Dmitriy A. Katz-Rogozhnikov , Kush R. Varshney , Ioana Baldini