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The Wigner-Weisskopf-type model developed in [R. Alicki and F. Giraldi, J. Phys. B {\bf 44}, 154020 (2011)] is applied to the biological process of energy transfer from a large peripheral light harvesting antenna to the reaction center.…

量子物理 · 物理学 2016-08-14 Robert Alicki , Wiesław Miklaszewski

Spectroscopic and optical properties of nanosystems and point defects are discussed within the framework of Green's function methods. We use an approach based on evaluating the self-energy in the so-called GW approximation and solving the…

材料科学 · 物理学 2009-11-11 Murilo L. Tiago , James R. Chelikowsky

The dynamics of pigment-pigment and pigment-protein interactions in light-harvesting complexes is studied with a novel approach which combines molecular dynamics (MD) simulations with quantum chemistry (QC) calculations. The MD simulations…

生物物理 · 物理学 2009-11-07 Ana Damjanovic , Ioan Kosztin , Klaus Schulten

In transitions between different environmental settings, a molecular system inevitably undergoes a range of detectable changes, and the ability to accurately simulate such responses, e.g., in the form of shifts to molecular energies,…

化学物理 · 物理学 2026-01-14 Kasper F. Schaltz , Jonas Greiner , Filippo Lipparini , Janus J. Eriksen

Methods for reconstructing the spectral density of a vibrational environment from experimental data can yield key insights into the impact of the environment on molecular function. Although such experimental methods exist, they generally…

化学物理 · 物理学 2025-09-11 Roosmarijn de Wit , Jonathan Keeling , Brendon W. Lovett , Alex W. Chin

It is shown that the conventional many-body techniques to calculate the Green's functions can be applied to the wide, compressible edge of a quantum Hall bar. The only ansatz we need is the existence of stable density modes that yields a…

强关联电子 · 物理学 2009-10-30 J. H. Han

The theoretical description of materials' properties driven out of equilibrium has important consequences in various fields such as semiconductor spintronics, nonlinear optics, continuous and discrete quantum information science and…

材料科学 · 物理学 2025-09-18 Jacopo Simoni , Gabriele Riva , Yuan Ping

Understanding design principles of biomolecular recognition is a key question of molecular biology. Yet the enormous complexity and diversity of biological molecules hamper the efforts to gain a predictive ability for the free energy of…

生物大分子 · 定量生物学 2012-04-19 Michael Elkin , Ingemar Andre , David B. Lukatsky

We present a mixed basis-set approach to obtain optical absorption spectra within a generalized Kohn-Sham time-dependent density functional theory framework. All occupied valence molecular orbitals (MOs) are expanded in a plane-wave (PW)…

化学物理 · 物理学 2025-08-13 Kyle Chen , Barry Y. Li , Tucker Allen , Daniel Neuhauser

Understanding frictional phenomena is a fascinating fundamental problem with huge potential impact on energy saving. Such an understanding requires monitoring what happens at the sliding buried interface, which is almost inaccessible by…

介观与纳米尺度物理 · 物理学 2023-04-24 Seiji Kajita , Alberto Pacini , Gabriele Losi , Nobuaki Kikkawa , Maria Clelia Righi

Over the past decade we have developed Koopmans functionals, a computationally efficient approach for predicting spectral properties with an orbital-density-dependent functional framework. These functionals impose a generalized piecewise…

We study the interaction of the relaxation processes with the density fluctuations by molecular dynamics simulation of a flexible molecule model for o-terphenyl (oTP) in the liquid and supercooled phases. We find evidence, besides the…

软凝聚态物质 · 物理学 2009-11-07 S. Mossa , G. Monaco , G. Ruocco

Following the calculation of optimal energy transfer in thermal environment in our first paper (Wu et al., New J. Phys., 2010, 12, 105012), full quantum dynamics and leading-order `classical' hopping kinetics are compared in the seven-site…

化学物理 · 物理学 2015-05-30 Jianlan Wu , Fan Liu , Jian Ma , Robert J. Silbey , Jianshu Cao

Microscopic biological systems operate far from equilibrium, are subject to strong fluctuations, and are composed of many coupled components with interactions varying in nature and strength. Researchers are actively investigating the…

统计力学 · 物理学 2023-12-25 Emma Lathouwers , David A. Sivak

We derive ab initio optical potentials from self-consistent Green's function (SCGF) theory and compute the elastic scattering of neutrons off oxygen and calcium isotopes. The comparison with scattering data is satisfactory at low scattering…

核理论 · 物理学 2019-09-04 A. Idini , C. Barbieri , P. Navrátil

To systematically describe evaporation spectra for light and heavy compound nuclei over a large range of excitation energies, it was necessary to consider three ingredients in the statistical model. Firstly, transmission coefficients or…

核理论 · 物理学 2014-11-21 R. J. Charity

We combine the coherent modified Redfield theory (CMRT) with the equation of motion-phase matching approach (PMA) to calculate two-dimensional photon echo spectra for photoactive molecular complexes with an intermediate strength of the…

化学物理 · 物理学 2015-10-28 Hong-Guang Duan , Arend G. Dijkstra , Peter Nalbach , Michael Thorwart

Large scale simulations of light-matter interaction in natural photosynthetic antenna complexes containing more than one hundred thousands chlorophyll molecules, comparable with natural size, have been performed. Photosynthetic antenna…

We investigate the electronic dynamics of model organic photovoltaic (OPV) system consisting of polyphenylene vinylene (PPV) oligomers and [6,6]-phenyl C61-butyric acid methylester (PCBM) blend using a mixed molecular mechanics/quantum…

材料科学 · 物理学 2015-09-21 Eric R. Bittner , Allen C. Kelley

The main problem in theoretical analysis of structures with strong confinement is the fact that standard mathematical tools: differential equations and Fourier's transformations are no longer applicable. In this paper we have demonstrated…

材料科学 · 物理学 2016-08-14 Jovan P. Šetrajčić