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From multicellular tissues to bacterial colonies, three dimensional cellular structures arise through the interaction of cellular activities and mechanical forces. Simple bacterial communities provide model systems for analyzing such…

软凝聚态物质 · 物理学 2024-01-11 Ana Carpio , Elena Cebrian , David R. Espeso , Perfecto Vidal

This study explores the application of elongated particle interaction models, traditionally used in liquid crystal phase research, in the context of early bacterial biofilm development. Through computer simulations using an agent-based…

软凝聚态物质 · 物理学 2025-11-05 Gabriel Santos-Díaz , Álvaro Rodríguez-Rivas , Alejandro Cuetos

Biofilms are ubiquitous macro-colonies of bacteria that develop at various interfaces (solid-liquid, solid-gas or liquid-gas). The formation of biofilms starts with the attachment of individual bacteria to an interface, where they…

生物物理 · 物理学 2016-11-03 Sarah Trinschek , Karin John , Uwe Thiele

Bacteria on surfaces exhibit collective behaviors, such as active turbulence and active stresses, which result from their motility, growth, and interactions with their local surroundings. However, interfacial deformations on soft surfaces…

软凝聚态物质 · 物理学 2022-09-13 Vincent Hickl , Gabriel Juarez

We introduce a system of bacteria confined to a finite 2D oil-water interface and driven on two distinct time scales by motility and by growth. The combined effect of activity on different time scales creates transitions between several…

软凝聚态物质 · 物理学 2023-06-28 Blake Langeslay , Gabriel Juarez

Biofilms are bacterial aggregates encased in a self-produced polymeric matrix which attach to moist surfaces and are extremely resistant to chemicals and antibiotics. Recent experiments show that their structure is defined by the interplay…

软凝聚态物质 · 物理学 2024-01-17 Ana Carpio , Elena Cebrian , Perfecto Vidal

Real-life bacteria often swim in complex fluids, but our understanding of the interactions between bacteria and complex surroundings is still evolving. In this work, rod-like \textit{Bacillus subtilis} swims in a quasi-2D environment with…

Bacteria at fluid interfaces endure physical and chemical stresses unique to these highly asymmetric environments. The responses of Pseudomonas aeruginosa PAO1 and PA14 to a hexadecane-water interface are compared. PAO1 cells form elastic…

软凝聚态物质 · 物理学 2017-07-17 Tagbo H. R. Niepa , Liana Vaccari , Robert L. Leheny , Mark Goulian , Daeyeon Lee , Kathleen J. Stebe

Biofilms are bacterial aggregates that grow on moist surfaces. Thin homogeneous biofilms naturally formed on the walls of conducts may serve as biosensors, providing information on the status of microsystems (MEMS) without disrupting them.…

软凝聚态物质 · 物理学 2024-01-17 Ana Carpio , Baldvin Einarsson , David R. Espeso

Bacterial cellulose biofilms are complex networks of strong interwoven nanofibers that control transport and protect bacterial colonies in the film. Design of diverse applications of bacterial cellulose films also relies on understanding…

软凝聚态物质 · 物理学 2022-06-09 Firoozeh Babayekhorasani , Maryam Hosseini , Patrick T. Spicer

Biofilms are complex, self-organized consortia of microorganisms that produce a functional, protective matrix of biomolecules. Physically, the structure of a biofilm can be described as an entangled polymer network which grows and changes…

生物物理 · 物理学 2016-11-08 Marco G. Mazza

Controlling bacterial surface adhesion and subsequent biofilm formation in fluid systems is crucial for the safety and efficacy of medical and industrial processes. Here, we theoretically examine the transport of bacteria close to surfaces,…

软凝聚态物质 · 物理学 2025-07-08 Edwina F. Yeo , Benjamin J. Walker , Philip Pearce , Mohit P. Dalwadi

The highly confined flow of the liquid phase, trapped between the gas bubbles, is at the origin of the large effective viscosity of the liquid foams. Despite the industrial relevance of this complex fluid, the foam viscosity remains…

软凝聚态物质 · 物理学 2020-01-08 Adrien Bussonnière , Evgenia Shabalina , Xavier Ah-Thon , Mickaël Le Fur , Isabelle Cantat

This fluid dynamics video presents three-dimensional kinetic simulations of the dynamics in suspensions of oxytactic bacteria confined in thin liquid film surrounded by air. At the initial time, the bacterial concentration is uniform and…

流体动力学 · 物理学 2011-10-17 Barath Ezhilan , Amir Alizadeh Pahlavan , David Saintillan

We confine a dense suspension of motile \textit{Escherichia coli} inside a spherical droplet in a water-in-oil emulsion, creating a "bacterially" propelled droplet. We show that droplets move in a persistent random walk, with a persistence…

软凝聚态物质 · 物理学 2019-12-10 Gabriel Ramos , Maria Luisa Cordero , Rodrigo Soto

The bacterium {\em Bacilus subtilis} frequently forms biofilms at the interface between the culture medium and the air. We develop a mathematical model that couples a description of bacteria as individual discrete objects to the standard…

细胞行为 · 定量生物学 2015-12-16 Maxime Ardré , Hervé Henry , Carine Douarche , Mathis Plapp

We study the assembly of colloids in a two phase water-water system that provides an environment that can sustain bacteria, providing a new structure with rich potential to confine and structure living colloids. The water-water system,…

软凝聚态物质 · 物理学 2014-12-12 Sarah D. Hann , Mark Goulian , Daeyeon Lee , Kathleen J. Stebe

The ability of bacteria to colonize and grow on different surfaces is an essential process for biofilm development and depends on complex biomechanical interactions between the biofilm and the underlying substrate. Changes in the physical…

生物物理 · 物理学 2021-03-16 Merrill Asp , Minh Tri Ho Thanh , Arvind Gopinath , Alison E. Patteson

Flagellar-driven locomotion plays a critical role in bacterial attachment and colonization of surfaces, contributing to the risks of contamination and infection. Tremendous attempts to uncover the underlying principles governing bacterial…

软凝聚态物质 · 物理学 2025-02-19 Xin-Xin Xu , Yangguang Tian , Yuhe Pu , Bingchen Che , Hao Luo , Yanan Liu , Yan-Jun Liu , Guangyin Jing

The dynamics of cellular aggregates is driven by the interplay of mechanochemical processes and cellular activity. Although deterministic models may capture mechanical features, local chemical fluctuations trigger random cell responses,…

软凝聚态物质 · 物理学 2024-01-17 Ana Carpio , Elena Cebrian
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