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The effects of intrinsic noise on stochastic delay systems is studied within an expansion in the inverse system size. We show that the stochastic nature of the underlying dynamics may induce oscillatory behaviour in parameter ranges where…

分子网络 · 定量生物学 2015-05-13 Tobias Galla

A key goal of systems biology is the predictive mathematical description of gene regulatory circuits. Different approaches are used such as deterministic and stochastic models, models that describe cell growth and division explicitly or…

分子网络 · 定量生物学 2012-10-12 Rahul Marathe , Veronika Bierbaum , David Gomez , Stefan Klumpp

Regulation of intrinsic noise in gene expression is essential for many cellular functions. Correspondingly, there is considerable interest in understanding how different molecular mechanisms of gene expression impact variations in protein…

分子网络 · 定量生物学 2011-03-02 Tao Jia , Rahul V. Kulkarni

Noise caused by fluctuations at the molecular level is a fundamental part of intracellular processes. While the response of biological systems to noise has been studied extensively, there has been limited understanding of how to exploit it…

分子网络 · 定量生物学 2015-10-14 Daniel K. Wells , William L. Kath , Adilson E. Motter

We analyze the effects of noise on the traveling wave dynamics in neural fields. The noise influences the dynamics on two scales: first, it causes fluctuations in the wave profile, and second, it causes a random shift in the phase of the…

概率论 · 数学 2015-08-06 Eva Lang

It is well-known that gene activation/deactivation dynamics may be a major source of randomness in genetic networks, also in the case of large concentrations of the transcription factors. In this work, we investigate the effect of realistic…

分子网络 · 定量生物学 2014-10-28 Sebastiano de Franciscis , Giulio Caravagna , Alberto d'Onofrio

Demographic noise has profound effects on evolutionary and population dynamics, as well as on chemical reaction systems and models of epidemiology. Such noise is intrinsic and due to the discreteness of the dynamics in finite populations.…

物理与社会 · 物理学 2015-05-14 Tobias Galla

We analyse the effect of intrinsic fluctuations on the properties of bistable stochastic systems with time scale separation operating under1 quasi-steady state conditions. We first formulate a stochastic generalisation of the quasi-steady…

生物物理 · 物理学 2016-03-02 Roberto de la Cruz , Pilar Guerrero , Fabian Spill , Tomás Alarcón

Multipotent stem or progenitor cells undergo a sequential series of binary fate decisions, which ultimately generate the diversity of differentiated cells. Efforts to understand cell fate control have focused on simple gene regulatory…

分子网络 · 定量生物学 2009-09-15 David V. Foster , Jacob G. Foster , Sui Huang , Stuart A. Kauffman

First return maps of interspike intervals for biological neurons that generate repetitive bursts of impulses can display stereotyped structures (neuronal signatures). Such structures have been linked to the possibility of multicoding and…

神经元与认知 · 定量生物学 2015-06-22 Bóris Marin , Reynaldo Daniel Pinto , Robert C Elson , Eduardo Colli

The dynamics of cellular chemical reactions are variable due to stochastic noise from intrinsic and extrinsic sources. The intrinsic noise is the intracellular fluctuations of molecular copy numbers caused by the probabilistic encounter of…

系统与控制 · 电气工程与系统科学 2023-01-13 Yuta Sakurai , Yutaka Hori

After being considered as a nuisance to be filtered out, it became recently clear that biochemical noise plays a complex role, often fully functional, for a genetic network. The influence of intrinsic and extrinsic noises on genetic…

分子网络 · 定量生物学 2015-06-05 Giulio Caravagna , Giancarlo Mauri , Alberto d'Onofrio

Interactions between neighboring cells are essential for generating or refining patterns in a number of biological systems. We propose a discrete filtering approach to predict how networks of cells modulate spatially varying input signals…

组织与器官 · 定量生物学 2019-02-14 Melinda Liu Perkins , Murat Arcak

Neuronal membrane potentials fluctuate stochastically due to conductance changes caused by random transitions between the open and close states of ion channels. Although it has previously been shown that channel noise can nontrivially…

神经元与认知 · 定量生物学 2013-12-06 Brett A. Schmerl , Mark D. McDonnell

Pathogen-mediated competition, through which an invasive species carrying and transmitting a pathogen can be a superior competitor to a more vulnerable resident species, is one of the principle driving forces influencing biodiversity in…

种群与进化 · 定量生物学 2009-11-13 Jaewook Joo , Eric Harvill , Reka Albert

Similar to intelligent multicellular neural networks controlling human brains, even single cells surprisingly are able to make intelligent decisions to classify several external stimuli or to associate them. This happens because of the fact…

分子网络 · 定量生物学 2018-11-21 Russell Bates , Oleg Blyuss , Ahmed Alsaedi , Alexey Zaikin

For cellular biochemical reaction systems where the numbers of molecules is small, significant noise is associated with chemical reaction events. This molecular noise can give rise to behavior that is very different from the predictions of…

分子网络 · 定量生物学 2009-11-13 Matthew Scott , Terence Hwa , Brian Ingalls

Fluctuations in intracellular reactions (intrinsic noise) reduce the information transmitted from an extracellular input to a cellular response. However, recent studies have demonstrated that the decrease in the transmitted information with…

分子网络 · 定量生物学 2019-10-09 Takehiro Tottori , Masashi Fujii , Shinya Kuroda

Neurons in the central nervous system are affected by complex and noisy signals due to fluctuations in their cellular environment and in the inputs they receive from many other cells 1,2. Such noise usually increases the probability that a…

神经元与认知 · 定量生物学 2008-05-06 Boris S. Gutkin , Juergen Jost , Henry C. Tuckwell

Decisions in the cell that lead to its ultimate fate are important for cellular functions such as proliferation, growth, differentiation, development and death. Understanding this decision process is imperative for advancements in the…

分子网络 · 定量生物学 2017-07-05 Zhenlong Jiang , Li Tian , Xiaona Fang , Kun Zhang , Qiong Liu , Qingzhe Dong , Erkang Wang , Jin Wang