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The progress of the successive rounds of catalytic conversion of substrates into product(s) by a single enzyme is characterized by the distribution of turnover times. Establishing the most general form of dependence of this distribution on…

化学物理 · 物理学 2014-12-11 Ashok Garai , Debashish Chowdhury

By reverting to spectroscopy, changes in the biological environment of a fluorescent probe can be monitored and the presence of various phases of the surrounding lipid bilayer membranes can be detected. This study highlights the important…

软凝聚态物质 · 物理学 2019-10-23 S. Knippenberg , G. Fabre , S. Osella , F. Di Meo , M. Paloncýová , M. Ameloot , P. Trouillas

Time-lapse fluorescent microscopy (TLFM) combined with predictive mathematical modelling is a powerful tool to study the inherently dynamic processes of life on the single-cell level. Such experiments are costly, complex and labour…

计算机视觉与模式识别 · 计算机科学 2021-09-27 Christoph Reich , Tim Prangemeier , Christian Wildner , Heinz Koeppl

We study the stochastic dynamics of growth and shrinkage of single actin filaments or microtubules taking into account insertion, removal, and ATP/GTP hydrolysis of subunits. The resulting phase diagram contains three different phases: a…

软凝聚态物质 · 物理学 2011-03-04 Padinhateeri Ranjith , David Lacoste , Kirone Mallick , Jean-Francois Joanny

Polymerization dynamics of single actin filaments is investigated theoretically using a stochastic model that takes into account the hydrolysis of ATP-actin subunits, the geometry of actin filament tips, the lateral interactions between the…

软凝聚态物质 · 物理学 2009-11-11 Evgeny B. Stukalin , Anatoly B. Kolomeisky

We analyze the dynamics of rotary biomotors within a simple nano-electromechanical model, consisting of a stator part and a ring-shaped rotor having twelve proton-binding sites. This model is closely related to the membrane-embedded F$_0$…

其他凝聚态物理 · 物理学 2009-11-13 A. Yu. Smirnov , S. Savel'ev , L. G. Mourokh , Franco Nori

We apply attosecond transient absorption spectroscopy (ATAS) to explore the effects of a nonzero permanent dipole on electron dynamics at the subfemtosecond scale, exemplified in the polar LiF molecule. In contrast with nonpolar systems, a…

原子物理 · 物理学 2018-11-14 Jørgen Johansen Rørstad , Nikolaj S. W. Ravn , Lun Yue , Lars Bojer Madsen

Conformational changes of individual fluorescently labeled proteins can be followed in solution using a confocal microscope. Two fluorophores attached to selected domains of the protein report fluctuating conformations. Based on F\"orster…

定量方法 · 定量生物学 2015-06-12 Nawid Zarrabi , Caterina Clausen , Monika G. Dueser , Michael Boersch

The release of hydrophilic solutes from micron scale particulate formulations can be understood as an interfacial transport problem in which diffusion across a heterogeneous amphiphilic coating competes with dissolution and convective…

软凝聚态物质 · 物理学 2026-01-01 Joonggwon Kim , Dogyun Byeon

Many medical or pharmaceutical processes have strict guidelines regarding continuous hygiene monitoring. This often involves the labor-intensive task of manually counting microorganisms in Petri dishes by trained personnel. Automation…

计算机视觉与模式识别 · 计算机科学 2023-08-22 Nikolas Ebert , Didier Stricker , Oliver Wasenmüller

Polymerization of actin proteins into dynamic structures is essential to eukaryotic cell life. This has motivated a large body of in vitro experiments measuring polymerization kinetics of individual filaments. Here we model these kinetics,…

生物大分子 · 定量生物学 2009-11-10 Dimitrios Vavylonis , Qingbo Yang , Ben O'Shaughnessy

The isomerisation of azo dyes can induce conformational change which have potential applications in medicine and environmental protection. We developed an agar diffusion assay to test the capture and release of biologically active molecules…

生物物理 · 物理学 2020-02-25 Stephen Atkins , Alysa Chueh , Taylor Barwell , Jean-Michel Nunzi , Laurent Seroude

The thermodynamic (TD) properties of biological membranes play a central role for living systems. It has been suggested, for instance, that nonlinear pulses such as action potentials (APs) can only exist if the membrane state is in vicinity…

生物物理 · 物理学 2020-07-16 Christian Fillafer , Anne Paeger , Matthias F. Schneider

Thermodynamic scaling explains the dramatic successes of CTP fused human growth proteins as regards lifetime in vivo and enhanced functionality compared to their wild-type analogues, like Biogen. The theory is semi-quantitative and contains…

定量方法 · 定量生物学 2016-10-05 J. C. Phillips

We demonstrate a method to determine the position of single atoms in a three-dimensional optical lattice. Atoms are sparsely loaded from a far-off-resonant optical tweezer into a few vertical planes of a cubic optical lattice positioned…

A broad range of membrane proteins display anomalous diffusion on the cell surface. Different methods provide evidence for obstructed subdiffusion and diffusion on a fractal space, but the underlying structure inducing anomalous diffusion…

生物物理 · 物理学 2017-03-15 Sanaz Sadegh , Jenny L. Higgins , Patrick C. Mannion , Michael M. Tamkun , Diego Krapf

Recent advances in optical technology have significantly enhanced the resolution of imaging of living cells, achieving nanometer-scale precision. However, the crowded three-dimensional environment within cells presents a challenge for…

光学 · 物理学 2024-11-20 Vahid Nasirimarekani , Zuzana Ditte , Eberhard Bodenschatz

We introduce Mask-ToF, a method to reduce flying pixels (FP) in time-of-flight (ToF) depth captures. FPs are pervasive artifacts which occur around depth edges, where light paths from both an object and its background are integrated over…

图像与视频处理 · 电气工程与系统科学 2021-04-01 Ilya Chugunov , Seung-Hwan Baek , Qiang Fu , Wolfgang Heidrich , Felix Heide

3D fluorescence microscopy of living organisms has increasingly become an essential and powerful tool in biomedical research and diagnosis. An exploding amount of imaging data has been collected, whereas efficient and effective…

图像与视频处理 · 电气工程与系统科学 2019-11-28 Yang Jiao , Mo Weng , Mei Yang