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The Bond Graph approach and the Chemical Reaction Network approach to modelling biomolecular systems developed independently. This paper brings together the two approaches by providing a bond graph interpretation of the chemical reaction…

分子网络 · 定量生物学 2019-07-04 Peter J. Gawthrop , Edmund J. Crampin

We introduce an approach based on the Chapman-Kolmogorov equation to model heterogeneous stochastic circuits, namely, the circuits combining binary or multi-state stochastic memristive devices and continuum reactive components (capacitors…

新兴技术 · 计算机科学 2023-10-03 V. A. Slipko , Y. V. Pershin

Complex diseases can be modeled as damage to intracellular networks that results in abnormal cell behaviors. Network-based dynamic models such as Boolean models have been employed to model a variety of biological systems including those…

生物物理 · 物理学 2016-12-30 Gang Yang , Colin Campbell , Réka Albert

The suppression of oscillations in coupled systems may lead to several unwanted situations, which requires a suitable treatment to overcome the suppression. In this paper, we show that the environmental coupling in the presence of direct…

混沌动力学 · 物理学 2017-07-19 Soumen Majhi , Bidesh K. Bera , Sourav K. Bhowmick , Dibakar Ghosh

We study the collective dynamics of noise-driven excitable elements, so-called active rotators. Crucially here, the natural frequencies and the individual coupling strengths are drawn from some joint probability distribution. Combining a…

无序系统与神经网络 · 物理学 2014-08-18 Bernard Sonnenschein , Thomas K. DM. Peron , Francisco A. Rodrigues , Jürgen Kurths , Lutz Schimansky-Geier

We investigate the dynamics of alginate gels, an important class of biopolymer-based viscoelastic materials, by combining mechanical tests and non-conventional, time-resolved light scattering methods. Two relaxation modes are observed upon…

软凝聚态物质 · 物理学 2013-10-14 Domenico Larobina , Luca Cipelletti

A new approach has been used to explain the experimental data for the $^{12}$C+$^{12}$C system over a wide energy range in the laboratory system from 32.0 MeV to 126.7 MeV. This new coupled-channels based approach involves replacing the…

核理论 · 物理学 2009-11-07 I. Boztosun , W. D. M. Rae

We provide a model to investigate feedback control of entanglement. It consists of two distant (two-level) atoms which interact through a radiation field and becomes entangled. We then show the possibility to stabilize such entanglement…

量子物理 · 物理学 2009-11-10 Stefano Mancini , Jin Wang

Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at…

分子网络 · 定量生物学 2015-06-05 Andrea De Martino , Daniele De Martino , Roberto Mulet , Guido Uguzzoni

Hydrogels have had a profound impact in the fields of tissue engineering, drug delivery, and materials science as a whole. Due to the network architecture of these materials, imbibement with water often results in uniform swelling and…

We show how to control the movement of a wheeled robot using on-board liquid marbles made of Belousov-Zhabotinsky solution droplets coated with polyethylene powder. Two stainless steel, iridium coated electrodes were inserted in a marble…

机器人学 · 计算机科学 2020-05-22 Michail-Antisthenis Tsompanas , Claire Fullarton , Andrew Adamatzky

The internal dynamics of active gels, both in artificial (in-vitro) model systems and inside the cytoskeleton of living cells, has been extensively studied by experiments of recent years. These dynamics are probed using tracer particles…

软凝聚态物质 · 物理学 2015-07-28 E. Ben Isaac , É. Fodor , P. Visco , F. van Wijland , N. S. Gov

By means of Langevin dynamics simulations, we investigate the gel formation of randomly functionalized polymers in solution, with the ability to form both intra- and intermolecular reversible bonds. Under highly dilute conditions, these…

软凝聚态物质 · 物理学 2021-09-15 Maud Formanek , Lorenzo Rovigatti , Emanuela Zaccarelli , Francesco Sciortino , Angel J. Moreno

The stability of complex networks, from power grids to biological systems, is crucial for their proper functioning. It is thus important to control such systems to maintain or restore their stability. Traditional approaches rely on…

最优化与控制 · 数学 2025-09-23 Yuzhen Qin , Fabio Pasqualetti , Danielle S. Bassett , Marcel van Gerven

The coherent quantum transport of matter wave through a ring-shaped circuit attached to leads defines an iconic system in mesoscopic physics that has allowed both to explore fundamental questions in quantum science and to draw important…

量子气体 · 物理学 2025-06-17 Francesco Perciavalle , Oliver Morsch , Davide Rossini , Luigi Amico

In this work, we examine metal electrode-ionomer electrolyte systems at high voltage / negative surface charge and at high pH to assess factors that influence hydrogen production efficiency. We simulate the hydrogen evolution electrode…

化学物理 · 物理学 2019-09-04 Reese E. Jones , William C. Tucker , Matthew J. L. Mills , Sanjeev Mukerjee

Feedback loops are major components of biochemical systems. Many systems show multiple such (positive or negative) feedback loops. Nevertheless, very few quantitative analyses address the question how such multiple feedback loops evolved.…

定量方法 · 定量生物学 2010-03-08 M. Hafner , H. Koeppl , A. Wagner

The results of numerical modeling of oscillations in a system of two coupled oscillators operatingon the basis of a virtual cathode with controlled external feedback are presented. It is shown that thereexist the modes with generation of…

等离子体物理 · 物理学 2007-05-23 Alexander Hramov

We perform experiments and phase model simulations with a ring network of oscillatory electrochemical reactions to explore the effect of random connections and non-isochronocity of the interactions on the pattern formation. A few additional…

无序系统与神经网络 · 物理学 2016-03-23 Michael Sebek , Ralf Tönjes , István Z. Kiss

The construction of a reaction network containing all relevant intermediates and elementary reactions is necessary for the accurate description of chemical processes. In the case of a complex chemical reaction (involving, for instance, many…

化学物理 · 物理学 2017-12-19 Gregor N. Simm , Markus Reiher