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We propose a unified framework based on persistent homology (PH) to characterize both local and global structures in disordered systems. It can simultaneously generate local and global descriptors using the same algorithm and data…

无序系统与神经网络 · 物理学 2025-11-03 An Wang , Li Zou

We define persistent homology groups over any set of spaces which have inclusions defined so that the corresponding directed graph between the spaces is acyclic, as well as along any subgraph of this directed graph. This method…

计算几何 · 计算机科学 2019-06-20 Erin Wolf Chambers , David Letscher

Topological data analysis is an emerging area in exploratory data analysis and data mining. Its main tool, persistent homology, has become a popular technique to study the structure of complex, high-dimensional data. In this paper, we…

图形学 · 计算机科学 2017-10-04 Mustafa Hajij , Bei Wang , Carlos Scheidegger , Paul Rosen

Many topological data analysis (TDA) pipelines compute large collections of persistence diagrams, yet vectorizations and kernel methods discard the rank-induced implication relations among persistence intervals that are essential for…

计算几何 · 计算机科学 2026-05-12 Charles Fanning , Mehmet Aktas

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

定量方法 · 定量生物学 2018-07-31 Zixuan Cang , Guo-Wei Wei

Phase separation mechanisms can produce a variety of complicated and intricate microstructures, which often can be difficult to characterize in a quantitative way. In recent years, a number of novel topological metrics for microstructures…

数值分析 · 数学 2020-05-29 Paweł Dłotko , Thomas Wanner

Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

机器学习 · 计算机科学 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

机器学习 · 统计学 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

Topological data analysis (TDA) is an area of data science that focuses on using invariants from algebraic topology to provide multiscale shape descriptors for geometric data sets such as point clouds. One of the most important such…

计算几何 · 计算机科学 2023-06-21 David Loiseaux , Mathieu Carrière , Andrew J. Blumberg

Topological data analysis (TDA), while abstract, allows a characterization of time-series data obtained from nonlinear and complex dynamical systems. Though it is surprising that such an abstract measure of structure - counting pieces and…

计算几何 · 计算机科学 2020-01-07 Nicole Sanderson , Elliott Shugerman , Samantha Molnar , James D. Meiss , Elizabeth Bradley

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

统计力学 · 物理学 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs). PDs exhibit, however, complex structure and are difficult to integrate in today's machine…

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

机器学习 · 计算机科学 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

Topological data analysis provides a set of tools to uncover low-dimensional structure in noisy point clouds. Prominent amongst the tools is persistence homology, which summarizes birth-death times of homological features using data objects…

统计方法学 · 统计学 2024-02-05 James Matuk , Sebastian Kurtek , Karthik Bharath

Information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, and biological networks. The primary challenge in this domain is measuring…

代数拓扑 · 数学 2019-07-23 Mehmet Emin Aktas , Esra Akbas , Ahmed El Fatmaoui

We present a new method for the statistical process control of lattice structures using tools from Topological Data Analysis. Motivated by applications in additive manufacturing, such as aerospace components and biomedical implants, where…

统计方法学 · 统计学 2025-10-15 Yulin An , Xueqi Zhao , Enrique del Castillo

Persistent homology (PH) has been widely applied to graph data to extract topological features. However, little attention has been paid to how different distance functions on a graph affect the resulting persistence barcodes and their…

代数拓扑 · 数学 2026-02-17 Eunwoo Heo , Byeongchan Choi , Jae-Hun Jung

Topological data analysis involves the statistical characterization of the shape of data. Persistent homology is a primary tool of topological data analysis, which can be used to analyze topological features and perform statistical…

统计方法学 · 统计学 2023-03-01 Chul Moon , Nicole A. Lazar

This work introduces the development of path Dirac and hypergraph Dirac operators, along with an exploration of their persistence. These operators excel in distinguishing between harmonic and non-harmonic spectra, offering valuable insights…

代数拓扑 · 数学 2023-12-05 Faisal Suwayyid , Guo-Wei Wei

Granular materials exhibit intricate force networks, often concentrated in chains rather than being uniformly distributed. These meso-scale structures are complex to characterize, owing to their heterogeneous and anisotropic nature. We…

软凝聚态物质 · 物理学 2025-08-06 S Vishali , Abrar Naseer , Vijay Natarajan , Tejas G Murthy