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Self-assembly is one of the prevalent strategies used by living systems to fabricate ensembles of precision nanometer-scale structures and devices. The push for analogous approaches to create synthetic nanomaterials has led to the…

Complexation of polymers at liquid interfaces is an emerging technique to produce all-liquid printable and self-healing devices and membranes. It is crucial to control the assembly process but the mechanisms at play remain unclear. Using…

软凝聚态物质 · 物理学 2021-01-13 J Dupré de Baubigny , P. Perrin , N. Pantoustier , Thomas Salez , M. Reyssat , C. Monteux

We consider self-assembly of proteins into a virus capsid by the methods of molecular dynamics. The capsid corresponds either to SPMV or CCMV and is studied with and without the RNA molecule inside. The proteins are flexible and described…

生物大分子 · 定量生物学 2018-11-05 Karol Wolek , Marek Cieplak

Computationally, low-resolution coarse-grained models provide the most viable means for simulating the large length and time scales associated with mesoscopic phenomena. Moreover, since lyotropic phases in solution may contain high solvent…

软凝聚态物质 · 物理学 2017-05-02 Somajit Dey , Jayashree Saha

Recent theoretical advances in elasticity of membranes following Helfrich's famous spontaneous curvature model are summarized in this review. The governing equations describing equilibrium configurations of lipid vesicles, lipid membranes…

软凝聚态物质 · 物理学 2017-07-27 Z. C. Tu , Z. C. Ou-Yang

A coarse-grained model developed by Marrink et al. [J. Phys. Chem. B 111, 7812 (2007)] is applied to investigate vesiculation of lipid [dipalmitoylphosphatidylcholine (DPPC)] droplets in water. Three kinds of morphologies of micelles are…

软凝聚态物质 · 物理学 2009-11-13 Zilu Wang , Xuehao He

We investigate aggregation mechanism of two proteins in a thermodynamically unambiguous manner by considering the finite size effect of free energy landscape of HP lattice protein model. Multi-Self-Overlap-Ensemble Monte Carlo method is…

生物大分子 · 定量生物学 2009-11-13 Kazuki Nakanishi , Macoto Kikuchi

In contrast to most self-assembling synthetic materials, which undergo unbounded growth, many biological self-assembly processes are self-limited. That is, the assembled structures have one or more finite dimensions that are much larger…

软凝聚态物质 · 物理学 2022-05-25 Huang Fang , Botond Tyukodi , W. Benjamin Rogers , Michael F. Hagan

Equilibrium self-assembly and conventional materials processing techniques fall far short of mimicking dynamic self-actuating processes that are commonplace throughout biology. To bridge the gap between living and synthetic matter, we study…

Understanding the complex self-assembly of biomacromolecules is a major outstanding question. Microtubules are one example of a biopolymer that possesses characteristics quite distinct from standard synthetic polymers that are derived from…

软凝聚态物质 · 物理学 2013-01-10 Shengfeng Cheng , Ankush Aggarwal , Mark J. Stevens

Hollow microgels are elastic polymer shells easily realizable in experiments. Recent works have shown the emergence of buckling events in dilute hollow microgels under the effect of an added osmotic pressure. Here, we perform large-scale…

软凝聚态物质 · 物理学 2026-01-19 Leah Rank , Emanuela Zaccarelli

The self-assembly of monoacyl lipids in solution is studied employing a model in which the lipid's hydrocarbon tail is described within the Rotational Isomeric State framework and is attached to a simple hydrophilic head. Mean-field theory…

统计力学 · 物理学 2009-10-31 M. Mueller , M. Schick

Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force…

软凝聚态物质 · 物理学 2017-10-11 Casper van der Wel , Doris Heinrich , Daniela J. Kraft

The molecular self-assembly of various structures such as micelles and vesicles has been the subject of comprehensive studies. Recently, a new approach to design these structures, the frame-guided assembly, has been developed to progress…

化学物理 · 物理学 2022-05-11 Simon Raschke , Andreas Heuer

We present fast simulation methods for the self-assembly of complex shapes in two dimensions. The shapes are modeled via a general boundary curve and interact via a standard volume term promoting overlap and an interpenetration penalty. To…

计算物理 · 物理学 2023-12-11 Lukas Mayrhofer , Myfanwy E. Evans , Gero Friesecke

We present a hybrid simulation method which allows one to study the dynamical evolution of self-assembling (co)polymer solutions in the presence of hydrodynamic interactions. The method combines an established dynamic density functional…

软凝聚态物质 · 物理学 2018-04-10 Johannes Heuser , G. J. Agur Sevink , Friederike Schmid

We describe a computational model for studying the complexity of self-assembled structures with active molecular components. Our model captures notions of growth and movement ubiquitous in biological systems. The model is inspired by…

数据结构与算法 · 计算机科学 2013-01-15 Damien Woods , Ho-Lin Chen , Scott Goodfriend , Nadine Dabby , Erik Winfree , Peng Yin

The Canham--Helfrich free-energy density for a lipid bilayer has drawn considerable attention. Aside from the mean and Gaussian curvatures, this free-energy density involves a spontaneous mean-curvature that encompasses information…

生物物理 · 物理学 2013-01-22 Brian Seguin , Eliot Fried

We have statistically characterized the self-assembly of multi-layer polystyrene colloidal crystals, using the technique of vertical deposition, with parameters chosen to produce thick layers of self-assembled crystals in one deposition…

介观与纳米尺度物理 · 物理学 2014-03-17 Tero J. Isotalo , Yao-Lan Tian , Mikko P. Konttinen , Ilari J. Maasilta

The self-assembly of photonic nanostructures in insects involves chitin, proteins, and lipids. While synthetic photonic systems have been extensively studied, current lipid-based self-assembly systems are limited in periodicity to…

软凝聚态物质 · 物理学 2026-05-29 Rushna Quddus , Meron Debas , Stefan Salentinig , Ullrich Steiner , Viola Vogler-Neuling