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In this work we challenge the main conclusions of Gu et al work (Controllability of structural brain networks. Nature communications 6, 8414, doi:10.1038/ncomms9414, 2015) on brain controllability. Using the same methods and analyses on…

神经元与认知 · 定量生物学 2018-07-10 Chengyi Tu , Rodrigo P. Rocha , Maurizio Corbetta , Sandro Zampieri , Marzo Zorzi , Samir Suweis

Brain networks exhibit remarkable structural properties, including high local clustering, short path lengths, and heavy-tailed weight and degree distributions. While these features are thought to enable efficient information processing with…

生物物理 · 物理学 2026-01-09 Aitor Morales-Gregorio , Anno C. Kurth , Karolína Korvasová

In the mammalian brain, many neuronal ensembles are involved in representing spatial structure of the environment. In particular, there exist cells that encode the animal's location and cells that encode head direction. A number of studies…

神经元与认知 · 定量生物学 2021-08-10 Y. Dabaghian

Diffusion Tensor Imaging (DTI) is an effective tool for the analysis of structural brain connectivity in normal development and in a broad range of brain disorders. However efforts to derive inherent characteristics of structural brain…

计算工程、金融与科学 · 计算机科学 2018-02-14 Yu Jin , Joseph F. JaJa , Rong Chen , Edward H. Herskovits

Maximal snake polyominoes are difficult to study numerically in large rectangles, as computing them requires the complete enumeration of all snakes for a specific grid size, which corresponds to a brute force algorithm. This technique is…

组合数学 · 数学 2026-03-16 Benjamin Gauthier , Alain Goupil , Fadel Toure

One of the best-known models in network science is preferential attachment. In this model, the probability of attaching to a node depends on the degree of all nodes in the population, and thus depends on global information. In many…

物理与社会 · 物理学 2022-09-22 Watson Levens , Alex Szorkovszky , David J. T. Sumpter

We consider the mechanisms by which folds, or sulci (troughs) and gyri (crests), develop in the brain. This feature, common to many gyrencephalic species including humans, has attracted recent attention from soft matter physicists. It…

组织与器官 · 定量生物学 2017-11-27 S. N. Verner , K. Garikipati

The self-organization of cells into complex tissues relies on a tight coordination of cell behavior. Identifying the cellular processes driving tissue growth is key to understanding the emergence of tissue forms and devising targeted…

定量方法 · 定量生物学 2024-03-27 Ruslan Mukhamadiarov , Matteo Ciarchi , Fabrizio Olmeda , Steffen Rulands

The geometry of the human cortex is complex and highly variable, with interactions between brain size, cortical folding, and age well-documented in the literature. However, few studies have explored how global brain size influences…

计算机视觉与模式识别 · 计算机科学 2025-11-20 Maxime Dieudonné , Guillaume Auzias , Julien Lefèvre

The rate at which individual bacterial cells grow depends on the concentrations of cellular components such as ribosomes and proteins. These concentrations continuously fluctuate over time and are inherited from mother to daughter cells,…

种群与进化 · 定量生物学 2024-08-21 Yaïr Hein , Farshid Jafarpour

Convolutional networks are ubiquitous in deep learning. They are particularly useful for images, as they reduce the number of parameters, reduce training time, and increase accuracy. However, as a model of the brain they are seriously…

机器学习 · 计算机科学 2022-01-19 Roman Pogodin , Yash Mehta , Timothy P. Lillicrap , Peter E. Latham

We describe an new algorithm for visualizing an alignment of biological sequences according to a probabilistic model of evolution. The resulting data array is readily interpreted by the human eye and amenable to digital image techniques. We…

种群与进化 · 定量生物学 2007-05-23 Lawren Smithline

Human brain contains about 10 billion neurons, each of which has about 10~10,000 nerve endings from which neurotransmitters are released in response to incoming spikes, and the released neurotransmitters then bind to receptors located in…

神经元与认知 · 定量生物学 2012-03-06 Xuejuan Zhang , Jianfeng Feng

Mounting experimental evidence suggests that brain-state-specific neural mechanisms, supported by connectomic architectures, play a crucial role in integrating past and contextual knowledge with the current, incoming flow of evidence (e.g.,…

Non-human primates (NHPs) serve as critical models for understanding human brain function and neurological disorders due to their close evolutionary relationship with humans. Accurate brain tissue segmentation in NHPs is critical for…

Widely used closed product-form networks have emerged recently as a primary model of stochastic growth of sub-cellular structures, e.g., cellular filaments. In the baseline model, homogeneous monomers attach and detach stochastically to…

Intrinsic brain activity is characterized by highly structured co-activations between different regions, whose origin is still under debate. In this paper, we address the question whether it is possible to unveil how the underlying…

Fragment-size distributions have been studied experimentally in masticated viscoelastic food (fish sausage).The mastication experiment in seven subjects was examined. We classified the obtained results into two groups, namely, a single…

数据分析、统计与概率 · 物理学 2015-05-18 Naoki Kobayashi , Kaoru Kohyama , Kouichi Shiozawa

The margins within the geographic range of species are often specific in terms of ecological and evolutionary processes, and can strongly influence the species' reaction to climate change. One of the frequently observed features at range…

种群与进化 · 定量生物学 2020-02-28 R. Juhász , B. Oborny

Modeling communication dynamics in the brain is a key challenge in network neuroscience. We present here a framework that combines two measurements for any system where different communication processes are taking place on top of a fixed…