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Segmentation of cellular structures in electron microscopy (EM) images is fundamental to analyzing the morphology of neurons and glial cells in the healthy and diseased brain tissue. Current neuronal segmentation applications are based on…

计算机视觉与模式识别 · 计算机科学 2024-11-06 Zewen Zhuo , Ilya Belevich , Ville Leinonen , Eija Jokitalo , Tarja Malm , Alejandra Sierra , Jussi Tohka

The reconstruction of images from a small number of projections using the maximum-entropy method (MEM) with the Shannon entropy is considered. MEM provides higher-quality image reconstruction for sources with extended components than the…

天体物理学 · 物理学 2008-11-26 Anisa T. Bajkova

Corneal endothelial cell segmentation plays a vital role inquantifying clinical indicators such as cell density, coefficient of variation,and hexagonality. However, the corneal endothelium's uneven reflectionand the subject's tremor and…

计算机视觉与模式识别 · 计算机科学 2021-06-15 Yinglin Zhang , Risa Higashita , Huazhu Fu , Yanwu Xu , Yang Zhang , Haofeng Liu , Jian Zhang , Jiang Liu

Lorentz Transmission Electron Microscopy (TEM) observations of magnetic nanoparticles contain information on the magnetic and electrostatic potentials. Vector Field Electron Tomography (VFET) can be used to reconstruct electromagnetic…

统计计算 · 统计学 2017-04-28 Prabhat KC , K. Aditya Mohan , Charudatta Phatak , Charles Bouman , Marc De Graef

The inability to acquire clean high-resolution (HR) electron microscopy (EM) images over a large brain tissue volume hampers many neuroscience studies. To address this challenge, we propose a deep-learning-based image super-resolution (SR)…

计算机视觉与模式识别 · 计算机科学 2024-01-29 Mohammad Khateri , Morteza Ghahremani , Alejandra Sierra , Jussi Tohka

Efforts to automate the reconstruction of neural circuits from 3D electron microscopic (EM) brain images are critical for the field of connectomics. An important computation for reconstruction is the detection of neuronal boundaries. Images…

计算机视觉与模式识别 · 计算机科学 2015-08-21 Kisuk Lee , Aleksandar Zlateski , Ashwin Vishwanathan , H. Sebastian Seung

A new iterative image reconstruction algorithm for electrical capacitance tomography (ECT) is proposed that is based on iterative soft thresholding of a total variation penalty and adaptive reweighted compressive sensing. This algorithm…

计算机视觉与模式识别 · 计算机科学 2016-11-22 Kezhi Li , Daniel Holland

Electron microscopy (EM) images exhibit anisotropic axial resolution due to the characteristics inherent to the imaging modality, presenting challenges in analysis and downstream tasks.In this paper, we propose a diffusion-model-based…

计算机视觉与模式识别 · 计算机科学 2023-08-04 Kyungryun Lee , Won-Ki Jeong

We propose a method to reconstruct the 3-D molecular structure from micrographs collected at just one sample tilt angle in the random conical tilt scheme in cryo-electron microscopy. Our method uses autocorrelation analysis on the…

数据分析、统计与概率 · 物理学 2021-01-12 Ti-Yen Lan , Nicolas Boumal , Amit Singer

Fluorescence microscopy has been a significant tool to observe long-term imaging of embryos (in vivo) growth over time. However, cumulative exposure is phototoxic to such sensitive live samples. While techniques like light-sheet…

图像与视频处理 · 电气工程与系统科学 2022-01-05 Varun Mannam , Jacob Brandt , Cody J. Smith , Scott Howard

Controlling crystalline material defects is crucial, as they affect properties of the material that may be detrimental or beneficial for the final performance of a device. Defect analysis on the sub-nanometer scale is enabled by…

材料科学 · 物理学 2021-06-03 Nik Dennler , Antonio Foncubierta-Rodriguez , Titus Neupert , Marilyne Sousa

Three-dimensional electron tomography is used to understand the structure and properties of samples in chemistry, materials science, geoscience, and biology. With the recent development of high-resolution detectors and algorithms that can…

计算物理 · 物理学 2021-10-18 David Ren , Michael Whittaker , Colin Ophus , Laura Waller

Electron tomography (ET) has become a standard technique for 3D characterization of materials at the nano-scale. Traditional reconstruction algorithms such as weighted back projection suffer from disruptive artifacts with insufficient…

计算机视觉与模式识别 · 计算机科学 2019-04-05 Yi Jiang , Elliot Padgett , Robert Hovden , David A. Muller

Tomography is an imaging technique that works by reconstructing a scene from acquired data in the form of line integrals of the imaging domain. A fundamental underlying assumption in the reconstruction procedure is the precise alignment of…

数值分析 · 数学 2018-07-13 Toby Sanders

The need for labour intensive pixel-wise annotation is a major limitation of many fully supervised learning methods for segmenting bioimages that can contain numerous object instances with thin separations. In this paper, we introduce a…

计算机视觉与模式识别 · 计算机科学 2020-09-11 Rihuan Ke , Aurélie Bugeau , Nicolas Papadakis , Peter Schuetz , Carola-Bibiane Schönlieb

Recent advances in scanning transmission electron and scanning probe microscopies have opened exciting opportunities in probing the materials structural parameters and various functional properties in real space with angstrom-level…

Objective: To develop, and demonstrate the feasibility of, a novel image reconstruction method for absolute Electrical Impedance Tomography (a-EIT) that pairs deep learning techniques with real-time robust D-bar methods. Approach: A D-bar…

数值分析 · 数学 2018-12-03 S. J. Hamilton , A. Hänninen , A. Hauptmann , V. Kolehmainen

High-quality pixel-level annotations of medical images are essential for supervised segmentation tasks, but obtaining such annotations is costly and requires medical expertise. To address this challenge, we propose a novel coarse-to-fine…

计算机视觉与模式识别 · 计算机科学 2025-08-06 Anghong Du , Nay Aung , Theodoros N. Arvanitis , Stefan K. Piechnik , Joao A C Lima , Steffen E. Petersen , Le Zhang

We report resolution enhancement in scanning electron microscopy (SEM) images using a generative adversarial network. We demonstrate the veracity of this deep learning-based super-resolution technique by inferring unresolved features in…

计算机视觉与模式识别 · 计算机科学 2019-08-21 Kevin de Haan , Zachary S. Ballard , Yair Rivenson , Yichen Wu , Aydogan Ozcan

Deep learning techniques have emerged as a promising approach to highly accelerated MRI. However, recent reconstruction challenges have shown several drawbacks in current deep learning approaches, including the loss of fine image details…

计算机视觉与模式识别 · 计算机科学 2021-09-24 Ruiyang Zhao , Yuxin Zhang , Burhaneddin Yaman , Matthew P. Lungren , Michael S. Hansen
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