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We present a mathematical framework for constructing and analyzing parallel algorithms for lattice Kinetic Monte Carlo (KMC) simulations. The resulting algorithms have the capacity to simulate a wide range of spatio-temporal scales in…

We complete the existing literature on the kinetic theory of systems with long-range interactions. Starting from the BBGKY hierarchy, or using projection operator technics or a quasilinear theory, a general kinetic equation can be derived…

统计力学 · 物理学 2015-05-18 Pierre-Henri Chavanis

This review article is intended as a practical guide for newcomers to the field of kinetic Monte Carlo (KMC) simulations, and specifically to lattice KMC simulations as prevalently used for surface and interface applications. We will…

计算物理 · 物理学 2019-04-05 Mie Andersen , Chiara Panosetti , Karsten Reuter

We present a multi-lattice kinetic Monte Carlo (kMC) approach that efficiently describes the atomistic dynamics of morphological transitions between commensurate structures at crystal surfaces. As an example we study the reduction of a…

介观与纳米尺度物理 · 物理学 2015-01-09 Max J. Hoffmann , Matthias Scheffler , Karsten Reuter

Chemical kinetic models in terms of ordinary differential equations correspond to finite dimensional dissipative dynamical systems involving a multiple time scale structure. Most dimension reduction approaches aimed at a slow…

动力系统 · 数学 2014-10-27 Dirk Lebiedz , Jonas Unger

The thermodynamic entropy of coarse-grained (CG) models stands as one of the most important properties for quantifying the missing information during the CG process and for establishing transferable (or extendible) CG interactions. However,…

化学物理 · 物理学 2024-04-10 Jaehyeok Jin , David R. Reichman

Kinetically-constrained models are lattice-gas models that are used for describing glassy systems. By construction, their equilibrium state is trivial and there are no equal-time correlations between the occupancy of different sites. We…

统计力学 · 物理学 2017-03-01 Eial Teomy , Yair Shokef

We propose a hierarchy of multi-level kinetic Monte Carlo methods for sampling high-dimensional, stochastic lattice particle dynamics with complex interactions. The method is based on the efficient coupling of different spatial resolution…

数值分析 · 数学 2012-08-06 Evangelia Kalligiannaki , Markos A. Katsoulakis , Petr Plechac

The hierarchy of correlations is an analytical approximation method which allows us to study non-equilibrium phenomena in strongly interacting quantum many-body systems on lattices in higher dimensions. So far, this method was restricted to…

统计力学 · 物理学 2023-11-08 Friedemann Queisser , Ralf Schützhold

We develop the kinetic theory of Hamiltonian systems with weak long-range interactions. Starting from the Klimontovich equation and using a quasilinear theory, we obtain a general kinetic equation that can be applied to spatially…

统计力学 · 物理学 2009-11-13 Pierre-Henri Chavanis

This paper investigates the cross-correlations across multiple climate model errors. We build a Bayesian hierarchical model that accounts for the spatial dependence of individual models as well as cross-covariances across different climate…

应用统计 · 统计学 2012-03-02 Huiyan Sang , Mikyoung Jun , Jianhua Z. Huang

This article is divided into two parts. In the first part, we study the hierarchical phenomenon of metastability in low-temperature lattice models in the most general setting. Given an abstract dynamical system governed by a Hamiltonian…

概率论 · 数学 2024-06-05 Seonwoo Kim

Developments in dynamical systems theory provides new support for the macroscale modelling of pdes and other microscale systems such as Lattice Boltzmann, Monte Carlo or Molecular Dynamics simulators. By systematically resolving subgrid…

数值分析 · 数学 2012-01-18 A. J. Roberts , Tony MacKenzie , J. E. Bunder

We have developed an algorithm coupling mesoscopic simulations on different levels in a hierarchy of Cartesian meshes. Based on the multiscale nature of the chemical reactions, some molecules in the system will live on a fine-grained mesh,…

数值分析 · 数学 2020-02-19 Stefan Hellander , Andreas Hellander

A new approach is suggested for the study of geometric symmetries in general relativity, leading to an invariant characterization of the evolutionary behaviour for a class of Spatially Homogeneous (SH) vacuum and orthogonal $\gamma -$law…

广义相对论与量子宇宙学 · 物理学 2009-11-11 Pantelis S. Apostolopoulos

Kinetic Monte Carlo (kMC) simulations have emerged as a key tool for microkinetic modeling in heterogeneous catalysis and other materials applications. Systems, where site-specificity of all elementary reactions allows a mapping onto a…

材料科学 · 物理学 2014-04-28 M. J. Hoffmann , S. Matera , K. Reuter

Some general dynamical properties of models for compaction of granular media based on master equations are analyzed. In particular, a one-dimensional lattice model with short-ranged dynamical constraints is considered. The stationary state…

统计力学 · 物理学 2009-10-31 A. Prados , J. Javier Brey , B. Sanchez-Rey

Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important examples include gene expression and enzymatic processes in living cells. Such systems are typically modelled as chemical reaction networks whose…

定量方法 · 定量生物学 2017-01-13 David Schnoerr , Guido Sanguinetti , Ramon Grima

In this paper we propose a new class of coupling methods for the sensitivity analysis of high dimensional stochastic systems and in particular for lattice Kinetic Monte Carlo. Sensitivity analysis for stochastic systems is typically based…

数值分析 · 数学 2015-06-18 Georgios Arampatzis , Markos Katsoulakis

Fluid dynamical simulations are often performed using cheap macroscopic models like the Euler equations. For rarefied gases under near-equilibrium conditions, however, macroscopic models are not sufficiently accurate and a simulation using…

数值分析 · 数学 2023-05-31 Julian Koellermeier , Hannes Vandecasteele
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