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Reduction of information entropy along with ever-increasing complexity are among the key signatures of living matter. Understanding the onset of such behavior in early prebiotic world is essential for solving the problem of origins of life.…

种群与进化 · 定量生物学 2018-10-17 Alexei V. Tkachenko , Sergei Maslov

We have generalized the Edwards' method of collective description of dense polymer systems in terms of effective potentials to polymer blends in the presence of a surface. With this method we have studied conformationally asymmetric…

软凝聚态物质 · 物理学 2009-11-11 Semjon Stepanow , Andrei A. Fedorenko

The interaction between a flexible polymer in good solvent and smaller associating solute molecules such as amphiphiles (surfactants) is considered theoretically. Attractive correlations, induced in the polymer because of the interaction,…

软凝聚态物质 · 物理学 2007-05-23 H. Diamant , D. Andelman

Single partially confined collapsed polymers are studied in two dimensions. They are described by self-avoiding random walks with nearest-neighbour attractions below the $\Theta$-point, on the surface of an infinitely long cylinder. For the…

统计力学 · 物理学 2009-11-07 Hsiao-Ping Hsu , Peter Grassberger

A collection of thin structures buckle, bend, and bump into each-other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will…

软凝聚态物质 · 物理学 2023-04-19 Arman Guerra , Anja Slim , Douglas P. Holmes , Ousmane Kodio

In this paper we consider the time complexity of computing the sum and product of two $n$-bit numbers within the tile self-assembly model. The (abstract) tile assembly model is a mathematical model of self-assembly in which system…

数据结构与算法 · 计算机科学 2013-08-06 Alexandra Keenan , Robert Schweller , Michael Sherman , Xingsi Zhong

Physical aging in polymers is a fundamental yet poorly understood phenomenon, as diverse macromolecular systems exhibit remarkably similar slow dynamics. Through molecular dynamics simulations of physically crosslinked networks composed of…

软凝聚态物质 · 物理学 2025-10-16 Patrick Ilg , Clarisse Luap , Martin Kröger

We investigate a fundamental question regarding a benchmark class of shapes in one of the simplest, yet most widely utilized abstract models of algorithmic tile self-assembly. Specifically, we study the directed tile complexity of a $k…

数据结构与算法 · 计算机科学 2020-07-23 David Furcy , Scott M. Summers , Logan Withers

We study a 3D ternary system derived as a sharp-interface limit of the Nakazawa-Ohta density functional theory of triblock copolymers, which combines an interface energy with a long range interaction term. Although both the binary case in…

偏微分方程分析 · 数学 2022-02-04 Xin Yang Lu , Jun-cheng Wei

Spontaneous self-assembly in molecular systems is a fundamental route to both biological and engineered soft matter. Simple micellisation, emulsion formation, and polymer mixing principles are well understood. However, the principles behind…

软凝聚态物质 · 物理学 2021-09-21 Alberto Scacchi , Sousa Javan Nikkhah , Maria Sammalkorpi , Tapio Ala-Nissila

We study a model of two polymers confined to a slit with sticky walls. More precisely, we find and analyse the exact solution of two directed friendly walks in such a geometry on the square lattice. We compare the infinite slit limit, in…

统计力学 · 物理学 2015-06-19 Thomas Wong , Aleksander L. Owczarek , Andrew Rechnitzer

Majumder, Reif and Sahu have presented a stochastic model of reversible, error-permitting, two-dimensional tile self-assembly, and showed that restricted classes of tile assembly systems achieved equilibrium in (expected) polynomial time.…

计算复杂性 · 计算机科学 2009-08-04 Aaron Sterling

We study the power of uncontrolled random molecular movement in the nubot model of self-assembly. The nubot model is an asynchronous nondeterministic cellular automaton augmented with rigid-body movement rules (push/pull, deterministically…

数据结构与算法 · 计算机科学 2014-09-18 Ho-Lin Chen , David Doty , Dhiraj Holden , Chris Thachuk , Damien Woods , Chun-Tao Yang

Self-assembly is a fundamental concept in biology and of significant interest to nanotechnology. Significant progress has been made in characterizing and controlling the properties of the resulting structures, both experimentally and…

软凝聚态物质 · 物理学 2024-03-06 Florian M. Gartner , Erwin Frey

Complexation of polymers at liquid interfaces is an emerging technique to produce all-liquid printable and self-healing devices and membranes. It is crucial to control the assembly process but the mechanisms at play remain unclear. Using…

软凝聚态物质 · 物理学 2021-01-13 J Dupré de Baubigny , P. Perrin , N. Pantoustier , Thomas Salez , M. Reyssat , C. Monteux

We consider the passage of long polymers of length N through a hole in a membrane. If the process is slow, it is in principle possible to focus on the dynamics of the number of monomers s on one side of the membrane, assuming that the two…

软凝聚态物质 · 物理学 2009-11-10 Yacov Kantor , Mehran Kardar

Semiflexible polymers are ubiquitous in natural and artificial systems, where their intermediate rigidity gives rise to rich structural and dynamical behavior. Confinement plays a central role in these behaviors, as spatial restrictions can…

软凝聚态物质 · 物理学 2026-03-31 Nasir Amiri , Jonathan P. Singer , Xin Yong

The equilibrium statistical mechanics of classical directed polymers in 2 dimensions is well known to be equivalent to the imaginary-time quantum dynamics of a 1+1-dimensional many-particle system, with polymer configurations corresponding…

软凝聚态物质 · 物理学 2013-05-30 D. Zeb Rocklin , Shina Tan , Paul M. Goldbart

We present a simple model describing the assembly and disassembly of heteropolymers consisting of two types of monomers $A$ and $B$. We prove that no matter how we manipulate the concentrations of $A$ and $B$, it takes longer than the…

统计力学 · 物理学 2022-06-29 Ikumi Kobayashi , Shin-ichi Sasa

Self-assembly, the process by which interacting components form well-defined and often intricate structures, is typically thought of as a spontaneous process arising from equilibrium dynamics. When a system is driven by external…

统计力学 · 物理学 2021-11-12 Shriram Chennakesavalu , Grant M. Rotskoff