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In this paper we present a network model to study the impact of spatial distribution of constituents, coupling between them and diffusive processes in the context of biological situations. The model is in terms of network of mobile elements…

分子网络 · 定量生物学 2007-05-23 Kanchan Thadani , Ashutosh

Plastic deformation in polycrystals is governed by the interplay between intra-granular slip and grain boundary-mediated plasticity. However, while the role played by bulk dislocations is relatively well-understood, the contribution of…

材料科学 · 物理学 2017-10-02 Nikhil Chandra Admal , Giacomo Po , Jaime Marian

Amorphous materials exhibit complex material proprteties with strongly nonlinear behaviors. Below a yield stress they behave as plastic solids, while they start to yield above a critical stress $\Sigma_c$. A key quantity controlling…

生物物理 · 物理学 2020-05-06 Marko Popović , Valentin Druelle , Natalie A. Dye , Frank Jülicher , Matthieu Wyart

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

统计力学 · 物理学 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

Granular media surround us, comprising everything from the ground we walk on to the foods we eat. Owing to their ubiquity our ability to understand and predict the mechanical evolution of grains is not only of key scientific importance, but…

图形学 · 计算机科学 2026-03-03 Zhecheng Wang , Breannan Smith , Abhishek Madan , Eitan Grinspun

Coarse-graining is a molecular modeling technique in which an atomistic system is represented in a simplified fashion that retains the most significant system features that contribute to a target output, while removing the degrees of…

Atomic diffusion affects the properties of various engineering materials, which predominantly occur in the polycrystalline state. A rigorous description of polycrystalline diffusion must therefore account for crystallographic defects,…

材料科学 · 物理学 2025-10-21 Lena Scholz , Yongliang Ou , Blazej Grabowski , Felix Fritzen

Most microorganisms regulate their cell size. We review here some of the mathematical formulations of the problem of cell size regulation. We focus on coarse-grained stochastic models and the statistics they generate. We review the…

细胞行为 · 定量生物学 2018-01-03 Po-Yi Ho , Jie Lin , Ariel Amir

A fundamental theory is presented for the mechanical response of polymer networks undergoing large deformation which seamlessly integrates statistical mechanical principles with macroscopic thermodynamic constitutive theory. Our formulation…

软凝聚态物质 · 物理学 2020-07-06 Michael R. Buche , Meredith N. Silberstein

Quantifying population dynamics is a fundamental challenge in ecology and evolutionary biology, particularly for species that are cryptic, microscopic, or extinct. Traditional approaches rely on continuous representations of population…

种群与进化 · 定量生物学 2025-02-18 Justin D. Yeakel

Inspired by the structure of technological networks, we discuss network evolution mechanisms which give rise to topological properties found in real spatial networks. Thus, the peculiar structure of transport and distribution networks is…

物理与社会 · 物理学 2009-11-13 R. Xulvi-Brunet , I. M. Sokolov

Rheological responses are the most relevant features to describe soft matter. So far, such constitutive relations are still not well understood in terms of small scale properties, although this knowledge would help the design of synthetic…

软凝聚态物质 · 物理学 2020-08-12 J. L. B. de Araujo , J. S. de Sousa , W. P. Ferreira , C. L. N. Oliveira

Nonequilibrium statistical mechanics exhibit a variety of complex phenomena far from equilibrium. It inherits challenges of equilibrium, including accurately describing the joint distribution of a large number of configurations, and also…

统计力学 · 物理学 2024-02-08 Ying Tang , Jing Liu , Jiang Zhang , Pan Zhang

Grain boundary networks should play a dominant role in determining the mechanical properties of nanocrystalline metals. However, these networks are difficult to characterize and their response to deformation is incompletely understood. In…

材料科学 · 物理学 2020-01-17 David B. Bober , Mukul Kumar , Timothy J. Rupert

Inference for time series of networks often relies on accurate vertex correspondence between network realizations at different times. In practice, however, such vertex alignments can be misspecified or unknown. We study the impact of vertex…

We consider a metapopulation version of the Schelling model of segregation over several complex networks and lattice. We show that the segregation process is topology independent and hence it is intrinsic to the individual tolerance. The…

物理与社会 · 物理学 2016-06-29 Yerali Gandica , Floriana Gargiulo , Timoteo Carletti

As a complementary tool to laboratory experiments, discrete numerical simulation, applied to granular materials, provides valuable information on the grain and contact scale microstructure, thereby enabling one to better understand the…

经典物理 · 物理学 2009-01-23 Jean-Noël Roux , François Chevoir

We characterize the force state of shear-loaded granular matter by relating the macroscopic stress to statistical properties of the force network. The purely repulsive nature of the interaction between grains naturally provides an upper…

无序系统与神经网络 · 物理学 2007-05-23 Wouter G. Ellenbroek , Jacco H. Snoeijer

In agricultural landscapes, the composition and spatial configuration of cultivated and semi-natural elements strongly impact species dynamics, their interactions and habitat connectivity. To allow for landscape structural analysis and…

种群与进化 · 定量生物学 2020-03-05 Patrizia Zamberletti , Julien Papaïx , Edith Gabriel , Thomas Opitz

The spread of viruses in biological networks, computer networks, and human contact networks can have devastating effects; developing and analyzing mathematical models of these systems can be insightful and lead to societal benefits. Prior…

最优化与控制 · 数学 2016-09-19 Philip E. Paré , Angelia Nedić , Carolyn L. Beck