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The self-propelled motion of microscopic bodies immersed in a fluid medium is studied using molecular dynamics simulation. The advantage of the atomistic approach is that the detailed level of description allows complete freedom in…

软凝聚态物质 · 物理学 2007-12-06 D. C. Rapaport

Locomotion and transport of microorganisms in fluids is an essential aspect of life. Search for food, orientation toward light, spreading of off-spring, and the formation of colonies are only possible due to locomotion. Swimming at the…

生物物理 · 物理学 2015-05-26 Jens Elgeti , Roland G. Winkler , Gerhard Gompper

Active matter denotes a system of particles immersed in an external environment, from which the particles extract energy continuously in order to perform directed motion. Extending the paradigm of active matter to a quantum framework…

A paradigm for internally driven matter is the active nematic liquid crystal, whereby the equations of a conventional nematic are supplemented by a minimal active stress that violates time reversal symmetry. In practice, active fluids may…

软凝聚态物质 · 物理学 2015-12-15 E. J. Hemingway , A. Maitra , S. Banerjee , M. C. Marchetti , S. Ramaswamy , S. M. Fielding , M. E. Cates

We theoretically investigate the effect of random fluctuations on the motion of elongated microswimmers near hydrodynamic transport barriers in externally-driven fluid flows. Focusing on the two-dimensional hyperbolic flow, we consider the…

流体动力学 · 物理学 2022-02-03 Simon A. Berman , Kevin A. Mitchell

Microorganisms living in microfluidic environments often form multi-species swarms, where they can leverage collective motions to achieve enhanced transport and spreading. Nevertheless, there is a general lack of physical understandings of…

流体动力学 · 物理学 2022-02-14 Bryce Palmer , Wen Yan , Tong Gao

The nature of emergent collective behaviors of moving physical agents interacting with their neighborhood is a long-standing open issue in physical and biological systems alike. This calls for studies on the control of synchronization and…

统计力学 · 物理学 2017-08-11 Tirthankar Banerjee , Abhik Basu

At the macroscopic scale, many important models of collective motion fall into the class of kinematic flows for which both velocity and diffusion terms depend only on particle density. When total particle numbers are fixed and finite,…

适应与自组织系统 · 物理学 2022-04-12 Jeremy Worsfold , Tim Rogers , Paul Milewski

The {\em hydrodynamic} approach to a continuum mechanical description of granular behavior is reviewed and elucidated. By considering energy and momentum conservation simultaneously, the general formalism of {\em hydrodynamics} provides a…

软凝聚态物质 · 物理学 2012-06-14 Yimin Jiang , Mario Liu

The movement of motor particles consisting of one or several molecular motors bound to a cargo particle is studied theoretically. The particles move on patterns of immobilized filaments. Several patterns are described for which the motor…

统计力学 · 物理学 2009-11-11 Stefan Klumpp , Reinhard Lipowsky

Pattern formation in uniaxial polymeric liquid crystals is studied for different dynamic closure approximations. Using the principles of mesoscopic non-equilibrium thermodynamics in a mean-field approach, we derive a Fokker-Planck equation…

软凝聚态物质 · 物理学 2015-06-05 Humberto Hijar , Diego Marquina de Hoyos , Ivan Santamaria-Holek

We review the observations and the basic laws describing the essential aspects of collective motion -- being one of the most common and spectacular manifestation of coordinated behavior. Our aim is to provide a balanced discussion of the…

统计力学 · 物理学 2012-08-16 Tamás Vicsek , Anna Zafeiris

We show theoretically that the mean turbulent dynamics can be described by a kinetic theory representation with a single free relaxation time that depends on space and time. A proper kinetic equation is constructed from averaging the…

流体动力学 · 物理学 2024-01-31 Hudong Chen , Ilya Staroselsky , Katepalli R. Sreenivasan , V. Yakhot

We use molecular dynamics simulations to study the dynamics of an ensemble of interacting self-propelled semi-flexible polymers in contact with a thermal bath. Our intention is to model complex systems of biological interest. We find that…

软凝聚态物质 · 物理学 2011-05-06 Davide Loi , Stefano Mossa , Leticia F. Cugliandolo

We investigate theoretically the collective dynamics of a suspension of low Reynolds number swimmers that are confined to two dimensions by a thin fluid film. Our model swimmer is characterized by internal degrees of freedom which locally…

生物物理 · 物理学 2015-05-19 M. Leoni , T. B. Liverpool

This essay provides a critical overview of the mathematical kinetic theory of active particles, which is used to model and study collective systems consisting of interacting living entities, such as those involved in behavior and evolution.…

物理与社会 · 物理学 2025-10-17 Marina Dolfin , Leone Leonida

The transport coefficients of a dilute gas of inelastic hard spheres immersed in a molecular gas are determined. We assume that the number density of the granular gas is much smaller than that of the surrounding molecular gas, so that the…

软凝聚态物质 · 物理学 2022-06-07 Rubén Gómez González , Vicente Garzó

Organisms often swim through density stratified fluids. In this Letter, we investigate the dynamics of small active particles swimming in density gradients and report theoretical evidence of taxis as a result of density stratification…

软凝聚态物质 · 物理学 2023-08-02 Vaseem A. Shaik , Gwynn J. Elfring

The collective dynamics of $N$ weakly coupled processive molecular motors are considered theoretically. We show, using a discrete lattice model, that the velocity-force curves strongly depend on the effective dynamic interactions between…

亚细胞过程 · 定量生物学 2009-11-11 O. Campas , Y. Kafri , K. B. Zeldovich , J. Casademunt , J. -F. Joanny

Biological transport is supported by collective dynamics of enzymatic molecules that are called motor proteins or molecular motors. Experiments suggest that motor proteins interact locally via short-range potentials. We investigate the…

统计力学 · 物理学 2015-06-18 Hamid Teimouri , Anatoly B. Kolomeisky , Kareem Mehrabiani