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The immune system is a complex biological system with a highly distributed, adaptive and self-organising nature. This paper presents an Artificial Immune System (AIS) that exploits some of these characteristics and is applied to the task of…

神经与进化计算 · 计算机科学 2010-07-05 Steve Cayzer , Uwe Aickelin

Domain classification is the task of mapping spoken language utterances to one of the natural language understanding domains in intelligent personal digital assistants (IPDAs). This is a major component in mainstream IPDAs in industry.…

机器学习 · 计算机科学 2019-05-06 Han Li , Jihwan Lee , Sidharth Mudgal , Ruhi Sarikaya , Young-Bum Kim

This thesis aims to use intelligent systems to extend and improve performance and security of cryptographic techniques. Genetic algorithms framework for cryptanalysis problem is addressed. A novel extension to the differential cryptanalysis…

神经与进化计算 · 计算机科学 2014-01-16 Ayman M. Bahaa-Eldin

Identifying immune checkpoint inhibitor (ICI) studies in genomic repositories like Gene Expression Omnibus (GEO) is vital for cancer research yet remains challenging due to semantic ambiguity, extreme class imbalance, and limited labeled…

计算与语言 · 计算机科学 2025-03-27 Shijia Zhang , Xiyu Ding , Kai Ding , Jacob Zhang , Kevin Galinsky , Mengrui Wang , Ryan P. Mayers , Zheyu Wang , Hadi Kharrazi

The human immune system has numerous properties that make it ripe for exploitation in the computational domain, such as robustness and fault tolerance, and many different algorithms, collectively termed Artificial Immune Systems (AIS), have…

人工智能 · 计算机科学 2010-07-05 Julie Greensmith , Amanda Whitbrook , Uwe Aickelin

The AUTO-PCOS Classification Challenge seeks to advance the diagnostic capabilities of artificial intelligence (AI) in identifying Polycystic Ovary Syndrome (PCOS) through automated classification of healthy and unhealthy ultrasound frames.…

图像与视频处理 · 电气工程与系统科学 2025-01-07 Atharva Divekar , Atharva Sonawane

Several modern genomic technologies, such as DNA-Methylation arrays, measure spatially registered probes that number in the hundreds of thousands across multiplechromosomes. The measured probes are by themselves less interesting…

应用统计 · 统计学 2016-11-16 John Nagorski , Genevera I. Allen

Reliable identification of molecular biomarkers is essential for accurate patient stratification. While state-of-the-art machine learning approaches for sample classification continue to push boundaries in terms of performance, most of…

分子网络 · 定量生物学 2019-11-07 Matteo Manica , Joris Cadow , Roland Mathis , María Rodríguez Martínez

The translation of comparative genomics into clinical decision support tools often depends on the quality of sequence alignments. However, currently used methods of multiple sequence alignments suffer from significant biases and problems…

基因组学 · 定量生物学 2023-11-30 Manal Helal , Vitali Sintchenko

Classical machine learning algorithms often face scalability bottlenecks when they are applied to large-scale data. Such algorithms were designed to work with small data that is assumed to fit in the memory of one machine. In this report,…

分布式、并行与集群计算 · 计算机科学 2015-05-14 Tarek Elgamal , Mohamed Hefeeda

Understanding protein sequences is vital and urgent for biology, healthcare, and medicine. Labeling approaches are expensive yet time-consuming, while the amount of unlabeled data is increasing quite faster than that of the labeled data due…

计算与语言 · 计算机科学 2021-11-01 Liang He , Shizhuo Zhang , Lijun Wu , Huanhuan Xia , Fusong Ju , He Zhang , Siyuan Liu , Yingce Xia , Jianwei Zhu , Pan Deng , Bin Shao , Tao Qin , Tie-Yan Liu

Precise and effective processing of cardiac imaging data is critical for the identification and management of the cardiovascular diseases. We introduce IntelliCardiac, a comprehensive, web-based medical image processing platform for the…

Protein function and dynamics are closely related to its sequence and structure. However prediction of protein function and dynamics from its sequence and structure is still a fundamental challenge in molecular biology. Protein…

生物大分子 · 定量生物学 2015-10-06 Zixuan Cang , Lin Mu , Kedi Wu , Kristopher Opron , Kelin Xia , Guo-Wei Wei

Skin cancer is one of the most common cancers worldwide and early detection is critical for effective treatment. However, current AI diagnostic tools are often trained on datasets dominated by lighter skin tones, leading to reduced accuracy…

计算机视觉与模式识别 · 计算机科学 2026-02-17 Areez Muhammed Shabu , Mohammad Samar Ansari , Asra Aslam

Considering the significance of proteins, computational protein science has always been a critical scientific field, dedicated to revealing knowledge and developing applications within the protein sequence-structure-function paradigm. In…

计算工程、金融与科学 · 计算机科学 2025-01-28 Wenqi Fan , Yi Zhou , Shijie Wang , Yuyao Yan , Hui Liu , Qian Zhao , Le Song , Qing Li

Biomarker discovery is vital in advancing personalized medicine, offering insights into disease diagnosis, prognosis, and therapeutic efficacy. Traditionally, the identification and validation of biomarkers heavily depend on extensive…

机器学习 · 计算机科学 2024-09-25 Wangyang Ying , Dongjie Wang , Xuanming Hu , Ji Qiu , Jin Park , Yanjie Fu

Identifying protein-protein interactions is crucial for a systems-level understanding of the cell. Recently, algorithms based on inverse statistical physics, e.g. Direct Coupling Analysis (DCA), have allowed to use evolutionarily related…

生物大分子 · 定量生物学 2020-03-25 Carlos A. Gandarilla-Pérez , Pierre Mergny , Martin Weigt , Anne-Florence Bitbol

Optimization is ubiquitous in our daily lives. In the past, (sub-)optimal solutions to any problem have been derived by trial and error, sheer luck, or the expertise of knowledgeable individuals. In our contemporary age, there thankfully…

神经与进化计算 · 计算机科学 2023-12-07 Raphael Patrick Prager

Computational protein design is experiencing a transformation driven by AI/ML. However, the range of potential protein sequences and structures is astronomically vast, even for moderately sized proteins. Hence, achieving convergence between…

分布式、并行与集群计算 · 计算机科学 2025-10-09 Aymen Alsaadi , Jonathan Ash , Mikhail Titov , Matteo Turilli , Andre Merzky , Shantenu Jha , Sagar Khare

Independent Component Analysis (ICA) is a technique for unsupervised exploration of multi-channel data that is widely used in observational sciences. In its classic form, ICA relies on modeling the data as linear mixtures of non-Gaussian…

机器学习 · 统计学 2018-08-01 Pierre Ablin , Jean-François Cardoso , Alexandre Gramfort