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The aim of this work is to develop a fast algorithm for approximating the matrix function $f(A)$ of a square matrix $A$ that is symmetric and has hierarchically semiseparable (HSS) structure. Appearing in a wide variety of applications,…

数值分析 · 数学 2024-02-28 Angelo A. Casulli , Daniel Kressner , Leonardo Robol

In this study, a new $\Delta$-evaluation method is introduced for solving a column permutation problem defined on a sparse binary matrix with the consecutive ones property. This problem models various $\mathcal{NP}$-hard problems in graph…

人工智能 · 计算机科学 2024-09-10 Júnior R. Lima , Viníicius Gandra M. Santos , Marco Antonio M. Carvalho

The path integral molecular dynamics (PIMD) method provides a convenient way to compute the quantum mechanical structural and thermodynamic properties of condensed phase systems at the expense of introducing an additional set of…

We study the problem of estimating a large, low-rank matrix corrupted by additive noise of unknown covariance, assuming one has access to additional side information in the form of noise-only measurements. We study the Whiten-Shrink-reColor…

统计理论 · 数学 2023-07-18 Matan Gavish , William Leeb , Elad Romanov

Many important problems are characterized by the eigenvalues of a large matrix. For example, the difficulty of many optimization problems, such as those arising from the fitting of large models in statistics and machine learning, can be…

Let $L_H$ denote the set of all normalized locally one-to-one and sense-preserving harmonic functions in the unit disc $\Delta$. It is well-known that every complex-valued harmonic function in the unit disc $\Delta$ can be uniquely…

复变函数 · 数学 2014-10-14 Ikkei Hotta , Andrzej Michalski

We consider the problem of estimating the trace of a matrix function $f(A)$. In certain situations, in particular if $f(A)$ cannot be well approximated by a low-rank matrix, combining probing methods based on graph colorings with stochastic…

数值分析 · 数学 2023-08-16 Andreas Frommer , Michele Rinelli , Marcel Schweitzer

A real-space formalism for density-functional perturbation theory (DFPT) is derived and applied for the computation of harmonic vibrational properties in molecules and solids. The practical implementation using numeric atom-centered…

材料科学 · 物理学 2017-03-08 Honghui Shang , Christian Carbogno , Patrick Rinke , Matthias Scheffler

Multiple time scale molecular dynamics enhances computational efficiency by updating slow motions less frequently than fast motions. However, in practice the largest outer time step possible is limited not by the physical forces but by…

统计力学 · 物理学 2011-01-13 Joseph A. Morrone , Thomas E. Markland , Michele Ceriotti , B. J. Berne

The eigenvalue density of a matrix plays an important role in various types of scientific computing such as electronic-structure calculations. In this paper, we propose a quantum algorithm for computing the eigenvalue density in a given…

量子物理 · 物理学 2021-12-13 Yasunori Futamura , Xiucai Ye , Tetsuya Sakurai

We present a quantum algorithm for estimating the matrix determinant based on quantum spectral sampling. The algorithm estimates the logarithm of the determinant of an $n \times n$ positive sparse matrix to an accuracy $\epsilon$ in time…

量子物理 · 物理学 2025-05-02 Vittorio Giovannetti , Seth Lloyd , Lorenzo Maccone

We present a matrix-factorization algorithm that scales to input matrices with both huge number of rows and columns. Learned factors may be sparse or dense and/or non-negative, which makes our algorithm suitable for dictionary learning,…

机器学习 · 统计学 2017-11-15 Arthur Mensch , Julien Mairal , Bertrand Thirion , Gael Varoquaux

We present a method, based on a non-Markovian Langevin equation, to include quantum corrections to the classical dynamics of ions in a quasi-harmonic system. By properly fitting the correlation function of the noise, one can vary the…

统计力学 · 物理学 2009-09-15 Michele Ceriotti , Giovanni Bussi , Michele Parrinello

In this paper, we present a finite element method (FEM) framework enhanced by an operator-adapted wavelet decomposition algorithm designed for the efficient analysis of multiscale electromagnetic problems. Usual adaptive FEM approaches,…

计算物理 · 物理学 2026-02-18 F. Şık , F. L. Teixeira , B. Shanker

We discuss the use of a Langevin equation with a colored (correlated) noise to perform constant-temperature molecular dynamics simulations. Since the equations of motion are linear in nature, it is easy to predict the response of a…

统计力学 · 物理学 2010-01-04 Michele Ceriotti , Giovanni Bussi , Michele Parrinello

We introduce a method for calculating individual elements of matrix functions. Our technique makes use of a novel series expansion for the action of matrix functions on basis vectors that is memory efficient even for very large matrices. We…

计算物理 · 物理学 2021-11-18 Lev Barash , Stefan Güttel , Itay Hen

This paper proposes an efficient method for computing selected generalized eigenpairs of a sparse Hermitian definite matrix pencil $(A,B)$. Based on Zolotarev's best rational function approximations of the signum function and conformal…

数值分析 · 数学 2021-01-01 Yingzhou Li , Haizhao Yang

We explore systems with a large number of fermionic degrees of freedom subject to non-local interactions. We study both vector and matrix-like models with quartic interactions. The exact thermal partition function is expressed in terms of…

高能物理 - 理论 · 物理学 2017-04-26 Dionysios Anninos , Guillermo A. Silva

Density matrix perturbation theory [Niklasson and Challacombe, Phys. Rev. Lett. 92, 193001 (2004)] is generalized to canonical (NVT) free energy ensembles in tight-binding, Hartree-Fock or Kohn-Sham density functional theory. The canonical…

化学物理 · 物理学 2015-12-09 Anders M. N. Niklasson , Marc J. Cawkwell , Emanuel H. Rubensson , Elias Rudberg

Density Functional Theory (DFT) has become a cornerstone in the modeling of metals. However, accurately simulating metals, particularly under extreme conditions, presents two significant challenges. First, simulating complex metallic…

化学物理 · 物理学 2024-03-08 Jake P. Vu , Ming Chen