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In two previous papers, the author showed how to decompose the Khovanov homology of a link $\mathcal{L}$ into the algebraic pairing of a type D structure and a type A structure (as defined in bordered Floer homology), whenever a diagram for…

We describe the first part of a gluing theory for the bigraded Khovanov homology with integer coefficients. This part associates a type D structure to a tangle properly embedded in a half-space and proves that the homotopy class of the type…

Khovanov homology is an invariant for links in the three sphere that categorizes the Jones polynomial. We extend Khovanov's construction to links in 3-manifolds that are connected sums of orientable interval bundles over surfaces. Cutting…

We continue to develop the tensor-algebra approach to knot polynomials with the goal to present the story in elementary and comprehensible form. The previously reviewed description of Khovanov cohomologies for the gauge group of rank N-1=1…

In an earlier paper, we introduced ``bordered knot algebras'', which are graded algebras indexed by a pair of integers (m,k). In a subsequent paper, we introduced a two-parameter family of differential graded algebra, the ``pong algebras'',…

We describe how to formulate Khovanov's functor-valued invariant of tangles in the language of bordered Heegaard Floer homology. We then give an alternate construction of Lawrence Roberts' Type D and Type A structures in Khovanov homology,…

Inspired by bordered Floer homology, we describe a type A structure on a Khovanov homology for a tangle, which complements the type D structure in a previous paper. The type A structure is a differential module over a certain algebra. This…

This paper studies planar algebras of Jones' style associated with the Young graph. We first see that, given a positive real valued function on the Young graph, we may obtain a planar algebra whose structure is defined in terms of a state…

To a semisimple and cosemisimple Hopf algebra over an algebraically closed field, we associate a planar algebra defined by generators and relations and show that it is a connected, irreducible, spherical, non-degenerate planar algebra with…

To every compact oriented surface that is composed entirely out of 2-dimensional 0- and 1-handles, we construct a dg category using structures arising in Khovanov homology. These dg categories form part of the 2-dimensional layer (a.k.a.…

The theory of the Kauffman bracket, which describes the Jones polynomial as a sum over closed circles formed by the planar resolution of vertices in a knot diagram, can be straightforwardly lifted from sl(2) to sl(N) at arbitrary N -- but…

We generalize Jones' planar algebras by internalising the notion to a pivotal braided tensor category $\mathcal{C}$. To formulate the notion, the planar tangles are now equipped with additional `anchor lines' which connect the inner circles…

We describe a "concentration on the diagonal" condition on the Khovanov complex of tangles, show that this condition is satisfied by the Khovanov complex of the single crossing tangles, and prove that it is preserved by alternating planar…

We show that Khovanov homology and Hochschild homology theories share common structure. In fact they overlap: Khovanov homology of a $(2,n)$-torus link can be interpreted as a Hochschild homology of the algebra underlining the Khovanov…

We introduce an invariant of tangles in Khovanov homology by considering a natural inverse system of Khovanov homology groups. As application, we derive an invariant of strongly invertible knots; this invariant takes the form of a graded…

We describe a bordered version of totally twisted Khovanov homology. We first twist Roberts's type $D$ structure by adding a "vertical" type $D$ structure which generalizes the vertical map in twisted tangle homology. One of the distinct…

We apply the techniques of totally twisted Khovanov homology to the constructions by M. Asaeda, J. Przytycki, and A. Sikora of Khovanov type homologies for links and tangles in I-bundles over (orientable) surfaces. As a result we describe…

Khovanov homology offers a nontrivial generalization of Jones polynomial of links in R^3 (and of Kauffman bracket skein module of some 3-manifolds). In this chapter (Chapter X) we define Khovanov homology of links in R^3 and generalize the…

Knot data analysis (KDA), which studies data with curve-type structures such as knots, links, and tangles, has emerging as a promising geometric topology approach in data science. While evolutionary Khovanov homology has been developed to…

The Temperley-Lieb algebra is a fundamental component of SU(2) topological quantum field theories. We construct chain complexes corresponding to minimal idempotents in the Temperley-Lieb algebra. Our results apply to the framework which…