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It has been demonstrated that the observed ratio of phenotypes of marker enzymes in some sugarbeet plants produced by mitotic agamospermy can be explained by different degrees of endoreduplication of chromosomes carrying different alleles…

基因组学 · 定量生物学 2007-05-23 Evgenii V. Levites

This article focuses on the development of the method for the genetic classification of agamospermous reproduction types in plants using sugar beet as an example. The classification feasibility is ensured by the use of isozymes as genetic…

基因组学 · 定量生物学 2014-01-03 Svetlana Sergeevna Kirikovich , Evgenii Vladimirovich Levites

During the eukaryotic cell cycle, chromatin undergoes several conformational changes, which are believed to play key roles in gene expression regulation during interphase, and in genome replication and division during mitosis. In this…

亚细胞过程 · 定量生物学 2007-09-03 Julien Mozziconacci , Christophe Lavelle , Maria Barbi , Annick Lesne , Jean-Marc Victor

One of the central problems in epigenetics is how epigenetic modification patterns and chromatin structure are regulated in the cell nucleus. The polymer Potts model, a recently studied model of chromatins, is introduced with an offset in…

软凝聚态物质 · 物理学 2025-05-13 Ryo Nakanishi , Koji Hukushima

The evolution of complex cellular life involved two major transitions: the encapsulation of self-replicating genetic entities into cellular units and the aggregation of individual genes into a collectively replicating genome. In this paper,…

种群与进化 · 定量生物学 2021-09-21 Daniel B. Cooney , Fernando W. Rossine , Dylan H. Morris , Simon A. Levin

Experimental data that prove the existence of the zygotic combinatorial process occurring in an embryogenesis-entering zygote are presented in the paper. The zygotic combinatorial process is found when analyzing F1 hybrid plants obtained…

基因组学 · 定量生物学 2012-12-14 Evgenii Vladimirovich Levites , Svetlana Sergeevna Kirikovich

Epigenetics is a driving force of important and ubiquitous phenomena in nature such as cell differentiation or even metamorphosis. Oppositely to its widespread role, understanding the biophysical principles that allow epigenetics to control…

软凝聚态物质 · 物理学 2020-01-08 Davide Colì , Davide Michieletto , Davide Marenduzzo , Enzo Orlandini

Meiotic recombination is a fundamental feature of sexually reproducing species. It is often required for proper chromosome segregation and plays important role in adaptation and the maintenance of genetic diversity. The molecular mechanisms…

种群与进化 · 定量生物学 2024-06-05 Susan E. Johnston

So far mutations analysis was performed in terms of transitions and trasversions, so on the basis of the molecule, or in terms of GC-content and isochors, through the quantification of GC->AT mutations over AT->GC mutations. We tried a…

其他定量生物学 · 定量生物学 2014-11-19 Valentina Agoni

A hypothesis of the evolution of the genetic code is proposed, the leading mechanism of which is the nucleotide spontaneous damage leading to AT-enrichment of the genome. The hypothesis accounts for stability of the genetic code towards…

种群与进化 · 定量生物学 2007-10-03 Denis A. Semenov

The role of post-translational modification of histones in eukaryotic gene regulation is well recognized. Epigenetic silencing of genes via heritable chromatin modifications plays a major role in cell fate specification in higher organisms.…

分子网络 · 定量生物学 2009-11-13 Mohammad Sedighi , Anirvan M. Sengupta

Heterozygote disadvantage is potentially a potent driver of population genetic divergence. Also referred to as underdominance, this phenomena describes a situation where a genetic heterozygote has a lower overall fitness than either…

种群与进化 · 定量生物学 2015-09-29 Áki J. Láruson , Floyd A. Reed

The Y-chromosome degeneration is still an intriguing mechanism and comprises the very origin of sex. We present a coupled version of the well known logistic map and the logistic equation describing the evolution of XY chromosomes. Although…

混沌动力学 · 物理学 2016-12-05 Matheus P. Lobo , Edison T. Franco , Nilo M. Sotomayor , Felipe R. Costa

Why is the genetic code the way it is? The most successful theory states that the codon assignments minimise the effects of errors arising in primordial living systems. Here a transversion is reported that leaves invariant degeneracy in the…

生物物理 · 物理学 2007-05-23 Jean-Luc Jestin

The X chromosome is present as a single copy in the heterogametic sex, and this hemizygosity is expected to drive unusual patterns of evolution on the X relative to the autosomes. For example, the hemizgosity of the X may lead to a lower…

种群与进化 · 定量生物学 2015-03-20 Melek A. Kayserili , Dave T. Gerrard , Pavel Tomancak , Alex T. Kalinka

The genetic instructions stored in the genome require an additional layer of information to robustly determine cell fate. This additional regulation is provided by the interplay between chromosome-patterning biochemical ("epigenetic") marks…

软凝聚态物质 · 物理学 2019-12-04 Davide Coli , Davide Michieletto , Davide Marenduzzo , Enzo Orlandini

A hypothesis of the evolution of the genetic code is proposed, the leading mechanism of which is the nucleotide spontaneous damage leading to AT-enrichment of the genome. The hypothesis accounts for stability of the genetic code towards…

生物大分子 · 定量生物学 2008-05-06 Denis A. Semenov

We review pro and contra of the hypothesis that generic polymer properties of topological constraints are behind many aspects of chromatin folding in eukaryotic cells. For that purpose, we review, first, recent theoretical and computational…

生物大分子 · 定量生物学 2015-06-18 Jonathan D. Halverson , Jan Smrek , Kurt Kremer , Alexander Y. Grosberg

More than 30 years ago, we published a paper entitled as abnormal chromatin configuration and oncogenesis, which proposed the first hypothesis that links oncogenesis to abnormal three-dimensional (3D) genome structure. Recently, many…

亚细胞过程 · 定量生物学 2019-02-07 Gao-De Li
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