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To survive starvation, Bacillus subtilis forms durable spores. After asymmetric cell division, the septum grows around the forespore in a process called engulfment, but the mechanism of force generation is unknown. Here, we derived a novel…

亚细胞过程 · 定量生物学 2017-10-16 Li-Wei Yap , Robert G. Endres

How systems are endowed with migration capacity is a fascinating question with implications ranging from the design of novel active systems to the control of microbial populations. Bacteria, which can be found in a variety of environments,…

生物物理 · 物理学 2017-07-03 Marc Hennes , Julien Tailleur , Gaëlle Charron , Adrian Daerr

Motility is a fundamental survival strategy of bacteria to navigate porous environments. Swimming cells thrive in quiescent wetlands and sediments at the bottom of the marine water column, where they mediate many essential biogeochemical…

软凝聚态物质 · 物理学 2022-01-11 Amin Dehkharghani , Nicolas Waisbord , Jeffrey S. Guasto

To survive starvation, the bacterium Bacillus subtilis forms durable spores. The initial step of sporulation is asymmetric cell division, leading to a large mother-cell and a small forespore compartment. After division is completed and the…

细胞行为 · 定量生物学 2015-06-23 Nikola Ojkic , Javier López-Garrido , Kit Pogliano , Robert G. Endres

Lactose is the major component of milk powders and is normally found to be in a glassy/amorphous state. During storage, lactose is known to participate in physicochemical processes, including crystallization on the surface and reaction with…

Real-life bacteria often swim in complex fluids, but our understanding of the interactions between bacteria and complex surroundings is still evolving. In this work, rod-like \textit{Bacillus subtilis} swims in a quasi-2D environment with…

While bacterial swimming has been well characterized in uniform liquid environments, only little is known about how bacteria propagate through complex environments, such as gel-like matrices or porous media that are typically encountered in…

软凝聚态物质 · 物理学 2024-08-06 Agniva Datta , Sönke Beier , Veronika Pfeifer , Robert Großmann , Carsten Beta

The mobility of water molecules confined in a silica pore is studied by computer simulation in the low hydration regime, where most of the molecules reside close to the hydrophilic substrate. A layer analysis of the single particle dynamics…

统计力学 · 物理学 2009-11-10 P. Gallo , M. Rovere

The authors use ab initio molecular dynamics and the density functional theory+U (DFT+U) method to compute the hydration environment of the manganese ion in manganese (II) and manganese (III) porphines (MnP) dispersed in liquid water. These…

统计力学 · 物理学 2007-05-23 Kevin Leung , Craig J. Medforth

We study the transport of bacteria in a porous media modeled by a square channel containing one cylindrical obstacle via molecular dynamics simulations coupled to a lattice Boltzmann fluid. Our bacteria model is a rod-shaped rigid body…

软凝聚态物质 · 物理学 2020-11-30 Miru Lee , Christoph Lohrmann , Kai Szuttor , Harold Auradou , Christian Holm

The separation of micron-sized bacterial spores (Bacillus cereus) from a steady flow of water through the use of ultrasonic standing waves is demonstrated. An ultrasonic resonator with cross-section of 0.0254 m x 0.0254 m has been designed…

流体动力学 · 物理学 2017-08-23 B. Lipkens , J. Dionne , M. Costolo , A. Stevens , Edward Rietman

Self-sustained turbulent structures have been observed in a wide range of living fluids, yet no quantitative theory exists to explain their properties. We report experiments on active turbulence in highly concentrated 3D suspensions of…

Bacterial swarming is a rapid mass-migration, in which thousands of cells spread collectively to colonize a surface. Physically, swarming is a natural example of active particles that use energy to generate motion. Accordingly,…

Highly concentrated active agents tend to exhibit turbulent flows, reminiscent of classical hydrodynamic turbulence, which has attracted considerable attention lately. Controlling the so-called active turbulence has long been a challenge,…

软凝聚态物质 · 物理学 2023-07-13 Kazusa Beppu , Jaakko V. I. Timonen

We study the phase diagram of a system of spherical particles interacting in three dimensions through a potential consisting of a strict hard core plus a linear repulsive shoulder at larger distances. The phase diagram (obtained…

统计力学 · 物理学 2009-10-31 E. A. Jagla

Active matter comprised of self-propelled interacting units holds a major promise for extraction of useful work from its seemingly chaotic out-of-equilibrium dynamics. Streamlining active matter to produce work is especially important at…

软凝聚态物质 · 物理学 2021-03-17 Mojtaba Rajabi , Hend Baza , Taras Turiv , Oleg D. Lavrentovich

One of the most promising applications in nanoscience is the design of new materials to improve water permeability and selectivity of nanoporous membranes. Understanding the molecular architecture behind these fascinating structures and how…

软凝聚态物质 · 物理学 2021-09-10 João P. K. Abal , Rodrigo F. Dillenburg , Mateus H. Köhler , Marcia C. Barbosa

The influence of shape fluctuations on deformable thermosensitive microgels in aqueous solution is investigated by dynamic light scattering (DLS) and depolarized dynamic light scattering (DDLS). The systems under study consist of a solid…

软凝聚态物质 · 物理学 2009-02-20 S. Bolisetty , M. Hoffmann , S. Lekkala , Th. Hellweg , M. Ballauff , L. Harnau

Water plays a key role in biological membrane transport. In ion channels and water-conducting pores (aquaporins), one dimensional confinement in conjunction with strong surface effects changes the physical behavior of water. In molecular…

生物物理 · 物理学 2019-07-02 Oliver Beckstein , Mark S. P. Sansom

The fungi disperse spores to move across landscapes and spore liberation takes different patterns. While many species release spores intermittently, others release spores at specific times of day or night according to intrinsic rhythms.…

生物物理 · 物理学 2022-06-08 D Lagomarsino-Oneto , J Golan , A Mazzino , A Pringle , A Seminara
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