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The forest-of-octrees approach to parallel adaptive mesh refinement and coarsening (AMR) has recently been demonstrated in the context of a number of large-scale PDE-based applications. Although linear octrees, which store only leaf…

分布式、并行与集群计算 · 计算机科学 2015-11-05 Tobin Isaac , Carsten Burstedde , Lucas C. Wilcox , Omar Ghattas

We describe a parallel, adaptive, multi-block algorithm for explicit integration of time dependent partial differential equations on two-dimensional Cartesian grids. The grid layout we consider consists of a nested hierarchy of fixed size,…

数学软件 · 计算机科学 2017-03-10 Donna Calhoun , Carsten Burstedde

Current Adaptive Mesh Refinement (AMR) simulations require algorithms that are highly parallelized and manage memory efficiently. As compute engines grow larger, AMR simulations will require algorithms that achieve new levels of efficient…

太阳与恒星天体物理 · 物理学 2015-03-19 Jonathan J. Carroll-Nellenback , Brandon Shroyer , Adam Frank , Chen Ding

Adaptive mesh refinement (AMR) is widely used to efficiently resolve localized features in time-dependent partial differential equations (PDEs) by selectively refining and coarsening the mesh. However, in long-horizon simulations, repeated…

Miller and Reif's FOCS'85 classic and fundamental tree contraction algorithm is a broadly applicable technique for the parallel solution of a large number of tree problems. Additionally it is also used as an algorithmic design technique for…

数据结构与算法 · 计算机科学 2021-11-04 MohammadTaghi Hajiaghayi , Marina Knittel , Hamed Saleh , Hsin-Hao Su

Current AMR simulations require algorithms that are highly parallelized and manage memory efficiently. As compute engines grow larger, AMR simulations will require algorithms that achieve new levels of efficient parallelization and memory…

天体物理仪器与方法 · 物理学 2011-10-10 Jonathan Carroll-Nellenback , Brandon Shroyer , Adam Frank , Chen Ding

We introduce several parallel algorithms operating on a distributed forest of adaptive quadtrees/octrees. They are targeted at large-scale applications relying on data layouts that are more complex than required for standard finite…

分布式、并行与集群计算 · 计算机科学 2019-06-20 Carsten Burstedde

We present an efficient MPI-parallel geometric multigrid library for quadtree (2D) or octree (3D) grids with adaptive refinement. Cartesian 2D/3D and cylindrical 2D geometries are supported, with second-order discretizations for the…

计算物理 · 物理学 2019-08-26 Jannis Teunissen , Rony Keppens

Structured adaptive mesh refinement (AMR), commonly implemented via quadtrees and octrees, underpins a wide range of applications including databases, computer graphics, physics simulations, and machine learning. However, octrees enforce…

数据结构与算法 · 计算机科学 2026-03-02 Theresa Pollinger , Masado Ishii , Jens Domke

In this article, we present a novel approach for block-structured adaptive mesh refinement (AMR) that is suitable for extreme-scale parallelism. All data structures are designed such that the size of the meta data in each distributed…

分布式、并行与集群计算 · 计算机科学 2018-07-24 Florian Schornbaum , Ulrich Rüde

Parallel implementation of numerical adaptive mesh refinement (AMR)strategies for solving 3D elastostatic contact mechanics problems is an essential step toward complex simulations that exceed current performance levels. This paper…

数值分析 · 数学 2025-11-26 Alexandre Epalle , Isabelle Ramière , Guillaume Latu , Frédéric Lebon

We propose a general algorithm for non-conforming adaptive mesh refinement (AMR) of unstructured meshes in high-order finite element codes. Our focus is on h-refinement with a fixed polynomial order. The algorithm handles triangular,…

数值分析 · 计算机科学 2019-05-13 Jakub Červený , Veselin Dobrev , Tzanio Kolev

GPUs and other accelerators are increasingly used for scientific computing. In the future, we want to add GPU support to parallel adaptive mesh refinement (AMR) codes written in Fortran. To understand which changes are necessary to obtain…

Obtainable computational efficiency is evaluated when using an Adaptive Mesh Refinement (AMR) strategy in time accurate simulations governed by sets of conservation laws. For a variety of 1D, 2D, and 3D hydro- and magnetohydrodynamic…

天体物理学 · 物理学 2009-11-10 R. Keppens , M. Nool , G. Toth , J. P. Goedbloed

The forest-of-refinement-trees approach allows for dynamic adaptive mesh refinement (AMR) at negligible cost. While originally developed for quadrilateral and hexahedral elements, previous work established the theory and algorithms for…

分布式、并行与集群计算 · 计算机科学 2026-05-25 David Knapp , Johannes Albrecht Holke , Thomas Spenke , Carsten Burstedde , Lukas Dreyer

In this work we formally derive and prove the correctness of the algorithms and data structures in a parallel, distributed-memory, generic finite element framework that supports h-adaptivity on computational domains represented as…

数学软件 · 计算机科学 2021-09-30 Santiago Badia , Alberto F. Martín , Eric Neiva , Francesc Verdugo

We present an MPI-parallel algorithm for the in-situ visualization of computational data that is built around a distributed linear forest-of-octrees data structure. Such octrees are frequently used in element-based numerical simulations;…

分布式、并行与集群计算 · 计算机科学 2018-09-06 Carsten Burstedde

This paper examines the application of adaptive mesh refinement (AMR) in the field of numerical weather prediction (NWP). We implement and assess two distinct AMR approaches and evaluate their performance through standard NWP benchmarks. In…

数值分析 · 数学 2024-04-26 Daniel S. Abdi , Ann Almgren , Francis X. Giraldo , Isidora Jankov

Adaptive Mesh Refinement (AMR) enables efficient computation of flows by providing high resolution in critical regions while allowing for coarsening in areas where fine detail is unnecessary. While early AMR software packages relied solely…

计算物理 · 物理学 2025-02-26 Khodr Jaber , Ebenezer Essel , Pierre Sullivan

In this thesis, we develop, discuss and implement algorithms for scalable parallel tree-based adaptive mesh refinement (AMR) using space-filling curves (SFCs). We create an AMR software that works independently of the used element type,…

分布式、并行与集群计算 · 计算机科学 2019-10-22 Johannes Holke
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