相关论文: Nonequilibrium dynamics of an exactly solvable Isi…
Equilibrium and out-of-equilibrium transitions of an off-lattice protein model have been identified and studied. In particular, the out-of-equilibrium dynamics of the protein undergoing mechanical unfolding is investigated, and by using a…
An Ising--like model of proteins is used to investigate the mechanical unfolding of the Green Fluorescent Protein along different directions. When the protein is pulled from its ends, we recover the major and minor unfolding pathways…
A driven Ising model with friction due to magnetic correlations has recently been proposed by Kadau et al. (Phys. Rev. Lett. 101, 137205 (2008)). The non-equilibrium phase transition present in this system is investigated in detail using…
The nonequilibrium dynamic phase transition, in the kinetic Ising model in presence of an oscillating magnetic field, has been studied by Monte Carlo simulation. The fluctuation of dynamic order parameter has been studied as a function of…
The non-equilibrium phase transition in driven two-dimensional Ising models with two different geometries is investigated using Monte Carlo methods as well as analytical calculations. The models show dissipation through fluctuation induced…
The two dimensional ferromagnetic Ising model in the presence of a propagating magnetic field wave (with well defined frequency and wavelength) is studied by Mone Carlo simulation. This study differs from all of the earlier studies done so…
A phase transition indicates a sudden change in the properties of a large system. For temperature-driven phase transitions this is related to non-analytic behavior of the free energy density at the critical temperature: The knowledge of the…
A central goal of protein-folding theory is to predict the stochastic dynamics of transition paths --- the rare trajectories that transit between the folded and unfolded ensembles --- using only thermodynamic information, such as a…
We present a thermodynamically consistent mesoscopic model of protein adsorption at liquid-solid interfaces. First describing the equilibrium state under varying protein concentration of the solution and binding conditions, we predict a…
We study a continuum model of dislocation transport in order to investigate the formation of heterogeneous dislocation patterns. We propose a physical mechanism which relates the formation of heterogeneous patterns to the dynamics of a…
A model system inspired by recent experiments on the dynamics of a folded protein under the influence of a sinusoidal force is investigated and found to replicate many of the response characteristics of such a system. The essence of the…
We study nonequilibrium dynamics of the quantum Ising chain at zero temperature when the transverse field is varied stochastically. In the equivalent fermion representation, the equation of motion of Majorana operators is derived in the…
We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurational space of the system. Using transition path theory we…
Spontaneous symmetry breaking occurs in various equilibrium and nonequilibrium systems, where phase transitions are typically marked by a single critical point that separates ordered and disordered regimes. We reveal a novel phenomenon in…
We analyse mobile-immobile transport of particles that switch between the mobile and immobile phases with finite rates. Despite this seemingly simple assumption of Poissonian switching we unveil a rich transport dynamics including…
We investigate proteins within heterogeneous cell membranes where non-equilibrium phenomena arises from spatial variations in concentration and temperature. We develop simulation methods building on non-equilibrium statistical mechanics to…
We establish a set of nonequilibrium quantum phase transitions in the Ising model driven under monochromatic nonadiabatic modulation of the transverse field. We show that besides the Ising-like critical behavior, the system exhibits an…
Nonequilibrium kinetic Ising models evolving under the competing effect of spin flips at zero temperature and Kawasaki-type spin-exchange kinetics at infinite temperature T are investigated here in one dimension from the point of view of…
Nonequilibrium kinetic Ising models evolving under the competing effect of spin flips at zero temperature and nearest neighbour spin exchanges at $T=\infty$ are investigated numerically from the point of view of a phase transition.…
We develop a theoretical approach to the protein folding problem based on out-of-equilibrium stochastic dynamics. Within this framework, the computational difficulties related to the existence of large time scale gaps in the protein folding…