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Gene transcription is a critical step in gene expression. The currently accepted physical model of transcription predicts the existence of a physical limit on the maximal rate of transcription, which does not depend on the transcribed gene.…

生物物理 · 物理学 2017-01-24 Alexander S. Serov , Alexander J. Levine , Madhav Mani

Symbiotic interactions between microbes and their multicellular hosts have manifold impacts on molecular, cellular and organismal biology. To identify candidate bacterial genes involved in maintaining endosymbiotic associations with insect…

Cell fate decisions in multicellular organisms are precisely coordinated, leading to highly reproducible macroscopic outcomes of developmental processes. The origins of this reproducibility can be found at the molecular level during the…

分子网络 · 定量生物学 2013-09-25 Mariela D. Petkova , Feng Liu , Thomas Gregor

The fruit fly Drosophila is a classic model organism to study adaptation as well as the relationship between genetic variation and phenotypes. Although associated bacterial communities might be important for many aspects of Drosophila…

种群与进化 · 定量生物学 2015-06-12 Fabian Staubach , John F. Baines , Sven Kuenzel , Elisabeth M. Bik , Dmitri A. Petrov

Developmental processes in multicellular organisms occur far from equilibrium, yet produce complex patterns with astonishing reproducibility. We measure the precision and reproducibility of bilaterally symmetric fly wings across the natural…

组织与器官 · 定量生物学 2013-09-25 Laurent Abouchar , Mariela D. Petkova , Cynthia R. Steinhardt , Thomas Gregor

Animal behavior spans many timescales, from short, seconds-scale actions to circadian rhythms over many hours to life-long changes during aging. Most quantitative behavior studies have focused on short-timescale behaviors such as locomotion…

生物物理 · 物理学 2023-09-11 Grace C. McKenzie-Smith , Scott W. Wolf , Julien F. Ayroles , Joshua W. Shaevitz

Axes of polarity (and primary morphogenetic gradients) are established in the oocyte - early embryo through active transport and localization of maternal factors. It is the oocyte - syncytial embryo of Drosophila (D. melanogaster) that is a…

定量方法 · 定量生物学 2025-10-21 Marat A. Sabirov , Ekaterina M. Myasnikova , Alexander V. Spirov

Across metazoans, early embryos exhibit a strikingly conserved slowing down of their cell duplication speed, despite widely varying developmental paces and underlying molecular mechanisms. Here we show that this common behavior arises…

The circadian clock can adapt itself to external cues, but the molecular mechanisms and regulatory networks governing circadian oscillations' transient adjustments are still largely unknown. Here we consider the specific case of circadian…

分子网络 · 定量生物学 2023-04-18 Ziyu Zhao , Dae-Sung Hwangbo , Sumit Saurabh , Clark Rosensweig , Ravi Allada , William L. Kath , Rosemary Braun

The results of a long-established investigation into teneral transpiration are used as a rudimentary data set. These data are not complete in that all are at 25 $^\circ\mathrm{C}$ and the temperature-dependence cannot, therefore be…

其他定量生物学 · 定量生物学 2015-10-29 S. J. Childs

In many animals, rhythmic motor activity is governed by neural limit cycle oscillations under the control of sensory feedback. In the fruit fly Drosophila melanogaster, the wingbeat rhythm is generated myogenically by stretch-activated…

神经元与认知 · 定量生物学 2013-01-23 Jan Bartussek , A. Kadir Mutlu , Martin Zapotocky , Steven N. Fry

Tiny flying insects, such as Drosophila melanogaster, fly by flapping their wings at frequencies faster than their brains are able to process. To do so, they rely on self-oscillation: dynamic instability, leading to emergent oscillation,…

生物物理 · 物理学 2023-11-16 Arion Pons

Mitosis in the early syncytial Drosophila embryo is highly correlated in space and time, as manifested in mitotic wavefronts that propagate across the embryo. In this paper we investigate the idea that the embryo can be considered a…

The fruit fly D. melanogaster is increasingly used as a model organism for studying acute hypoxia tolerance and for studying aging, but the interactions between these two factors are not well known. Here we show that hypoxia tolerance…

分子网络 · 定量生物学 2009-01-13 Laurence Coquin , Jacob D. Feala , Andrew D. McCulloch , Giovanni Paternostro

To study how a zygote develops into an embryo with different tissues, large-scale 4D confocal movies of C. elegans embryos have been produced recently by experimental biologists. However, the lack of principled statistical methods for the…

应用统计 · 统计学 2015-09-17 Jie Hu , Zhongying Zhao , Hari Krishna Yalamanchili , Junwen Wang , Kenny Ye , Xiaodan Fan

Within developing embryos, tissues flow and reorganize dramatically on timescales as short as minutes. This includes epithelial tissues, which often narrow and elongate in convergent extension movements due to anisotropies in external…

组织与器官 · 定量生物学 2020-06-24 Xun Wang , Matthias Merkel , Leo B. Sutter , Gonca Erdemci-Tandogan , M. Lisa Manning , Karen E. Kasza

The cell nucleus is enveloped by a complex membrane, whose wrinkling has been implicated in disease and cellular aging. The biophysical dynamics and spectral evolution of nuclear wrinkling during multicellular development remain poorly…

Constraints in embryonic development are thought to bias the direction of evolution by making some changes less likely, and others more likely, depending on their consequences on ontogeny. Here, we characterize the constraints acting on…

种群与进化 · 定量生物学 2012-03-08 J. Roux , M. Robinson-Rechavi

Seawater temperature rise is damaging coral reef ecosystems. There is growing evidence for the negative impact of rising temperatures on the survival of adult corals and their reproductive success. However, the effect of elevated…

种群与进化 · 定量生物学 2023-08-29 Antoine Puisay , Laetitia Hédouin , Rosanne Pilon , Claire Goiran , Benoit Pujol

We extend the Sonora Diamondback brown dwarf evolution models to higher effective temperatures to treat the evolution of younger, higher mass objects. Due to an upper temperature limit of $T_\mathrm{eff}=$2400 K in the original Sonora…