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相关论文: Kidney branching morphogenesis under the control o…

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Kidney branching morphogenesis has been studied extensively, but the mechanism that defines the branch points is still elusive. Here we obtained a 2D movie of kidney branching morphogenesis in culture to test different models of branching…

组织与器官 · 定量生物学 2013-07-02 Srivathsan Adivarahan , Denis Menshykau , Odysse Michos , Dagmar Iber

Turing models have been proposed to explain the emergence of digits during limb development. However, so far the molecular components that would give rise to Turing patterns are elusive. We have recently shown that a particular type of…

组织与器官 · 定量生物学 2013-01-07 Amarendra Badugu , Conradin Kraemer , Philipp Germann , Denis Menshykau , Dagmar Iber

Many organs of higher organisms, such as the vascular system, lung, kidney, pancreas, liver and glands, are heavily branched structures. The branching process during lung development has been studied in great detail and is remarkably…

组织与器官 · 定量生物学 2012-03-08 Denis Menshykau , Conradin Kraemer , Dagmar Iber

The development of long bones requires a sophisticated spatial organization of cellular signaling, proliferation, and differentiation programs. How such spatial organization emerges on the growing long bone domain is still unresolved. Based…

组织与器官 · 定量生物学 2015-06-17 Simon Tanaka , Dagmar Iber

Proper lung functioning requires not only a correct structure of the conducting airway tree, but also the simultaneous development of smooth muscles and vasculature. Lung branching morphogenesis is strongly stereotyped and involves the…

组织与器官 · 定量生物学 2012-09-19 Géraldine Cellière , Denis Menshykau , Dagmar Iber

A common developmental process, called branching morphogenesis, generates the epithelial trees in a variety of organs, including the lungs, kidneys, and glands. How branching morphogenesis can create epithelial architectures of very…

组织与器官 · 定量生物学 2021-03-02 Christine Lang , Lisa Conrad , Dagmar Iber

An understanding of the underlying mechanism of side--branching is paramount in controlling and/or therapeutically treating mammalian organs, such as lungs, kidneys, and glands. Motivated by an activator-inhibitor-substrate approach that is…

斑图形成与孤子 · 物理学 2021-07-20 Arik Yochelis

Turing mechanisms can yield a large variety of patterns from noisy, homogenous initial conditions and have been proposed as patterning mechanism for many developmental processes. However, the molecular components that give rise to Turing…

分子网络 · 定量生物学 2015-06-22 Tamás Kurics , Denis Menshykau , Dagmar Iber

Branching morphogenesis generates epithelial trees which facilitate gas exchange, filtering, as well as secretion processes with their large surface to volume ratio. In this review, we focus on the developmental mechanisms that control the…

组织与器官 · 定量生物学 2020-12-23 Dagmar Iber

Many organs of higher organisms are heavily branched structures and arise by an at first sight similar process of branching morphogenesis. Yet the regulatory components and local interactions that have been identified differ greatly in…

组织与器官 · 定量生物学 2013-08-12 Dagmar Iber , Denis Menshykau

Organogenesis has been studied for decades, but fundamental questions regarding the control of growth and shape remain unsolved. We have recently shown that of all proposed mathematical models only ligand-receptor based Turing models…

定量方法 · 定量生物学 2016-10-31 Lucas Daniel Wittwer , Roberto Croce , Sebastian Aland , Dagmar Iber

Gene regulatory networks (GRNs) control cellular function and decision making during tissue development and homeostasis. Mathematical tools based on dynamical systems theory are often used to model these networks, but the size and…

分子网络 · 定量生物学 2018-03-16 Edgar Herrera-Delgado , Ruben Perez-Carrasco , James Briscoe , Peter Sollich

Confirming Turing's theory of morphogens in developmental processes is challenging, and synthetic biology has opened new avenues for testing Turing's predictions. Synthetic mammalian pattern formation has been recently achieved through a…

斑图形成与孤子 · 物理学 2025-09-22 Mohamed Amine Ouchdiri , Saad Benjelloun , Adnane Saoud , Irene Otero-Muras

The formation of self-organized patterns is key to the morphogenesis of multicellular organisms, although a comprehensive theory of biological pattern formation is still lacking. Here, we propose a minimal model combining tissue mechanics…

生物物理 · 物理学 2022-06-08 P. Recho , A. Hallou , E. Hannezo

During organogenesis tissue grows and deforms. The growth processes are controlled by diffusible proteins, so-called morphogens. Many different patterning mechanisms have been proposed. The stereotypic branching program during lung…

定量方法 · 定量生物学 2017-10-10 Lucas D. Wittwer , Michael Peters , Sebastian Aland , Dagmar Iber

Since its introduction in 1952, Turing's (pre-)pattern theory ("the chemical basis of morphogenesis") has been widely applied to a number of areas in developmental biology. The related pattern formation models normally comprise a system of…

细胞行为 · 定量生物学 2020-10-28 Fiona R Macfarlane , Mark AJ Chaplain , Tommaso Lorenzi

Turing patterns are fundamental in biophysics, emerging from short-range activation and long-range inhibition processes. However, their paradigm is based on diffusive transport processes, which yields Turing patters that are less sharp than…

软凝聚态物质 · 物理学 2023-11-13 Benjamin M. Alessio , Ankur Gupta

Notch signaling is an evolutionary conserved cell-cell communication pathway. Besides regulating cell-fate decisions at an individual cell level, Notch signaling coordinates the emergent spatiotemporal patterning in a tissue through…

分子网络 · 定量生物学 2020-05-13 Federico Bocci , Jose Nelson Onuchic , Mohit Kumar Jolly

Intracellular protein patterns govern essential cellular functions by dynamically redistributing proteins between membrane-bound and cytosolic states, conserving their total numbers. This review presents a theoretical framework for…

生物物理 · 物理学 2025-12-16 Erwin Frey , Henrik Weyer

The growth and scaling of organs is a fundamental aspect of animal development. However, how organs grow to the right size and shape required by physiological demands, remains largely unknown. Here, we provide a framework combining theory…

生物物理 · 物理学 2026-02-04 Christian Hanauer , Amrutha Palavalli , Baiqun An , Efe Ilker , Jochen C. Rink , Frank Jülicher
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