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In any ecosystem, the conditions of the environment and the characteristics of the species that inhabit it are entangled, co-evolving in space and time. We introduce a model that couples active agents with a dynamic environment, interpreted…

种群与进化 · 定量生物学 2025-12-10 G. Briozzo , G. J. Sibona , F. Peruani

Accurate estimates of microbial species abundances are needed to advance our understanding of the role that microbiomes play in human and environmental health. However, artificially constructed microbiomes demonstrate that intuitive…

统计方法学 · 统计学 2025-03-17 David S Clausen , Amy D Willis

The macroscopic behavior of the solution of a coupled system of partial differential equations arising in the modeling of reaction-diffusion processes in periodic porous media is analyzed. Our mathematical model can be used for studying…

偏微分方程分析 · 数学 2019-06-19 G. Cardone , C. Perugia , C. Timofte

The CDW Hartree-Fock state at half filling and half electron per unit cell is examined. Firstly, an exact solution in terms of Bloch-like states is presented. Using this solution we discuss the dynamics near half filling and show the mass…

介观与纳米尺度物理 · 物理学 2009-11-07 Alejandro Cabo , Francisco Claro , Alejandro Perez

Optimization-based models have been used to predict cellular behavior for over 25 years. The constraints in these models are derived from genome annotations, measured macro-molecular composition of cells, and by measuring the cell's growth…

We study the coverage properties of full conformal regression in the proportional asymptotic regime where the ratio of the dimension and the sample size converges to a constant. In this setting, existing theory tells us only that full…

统计理论 · 数学 2025-03-03 Isaac Gibbs , Emmanuel J. Candès

The ocean is filled with microscopic microalgae called phytoplankton, which together are responsible for as much photosynthesis as all plants on land combined. Our ability to predict their response to the warming ocean relies on…

应用统计 · 统计学 2022-08-05 Sangwon Hyun , Mattias Rolf Cape , Francois Ribalet , Jacob Bien

When a fluid is subject to an external field, as is the case near an interface or under spatial confinement, then the density becomes spatially inhomogeneous. Although the one-body density provides much useful information, a higher level of…

软凝聚态物质 · 物理学 2022-07-14 S. M. Tschopp , F. Sammüller , S. Hermann , M. Schmidt , J. M. Brader

In recent years, machine learning has demonstrated impressive capability in handling molecular science tasks. To support various molecular properties at scale, machine learning models are trained in the multi-task learning paradigm.…

机器学习 · 计算机科学 2024-10-15 Yuxuan Ren , Dihan Zheng , Chang Liu , Peiran Jin , Yu Shi , Lin Huang , Jiyan He , Shengjie Luo , Tao Qin , Tie-Yan Liu

In this study, we investigate the complexity of two-phase flow (air/water) in a heterogeneous soil sample by using complex network theory, where the supposed porous media is non-deformable media, under the time-dependent gas pressure. Based…

计算工程、金融与科学 · 计算机科学 2010-08-11 Hamed. O. Ghaffari , Mamdou Fall , Erman. Evgin

One of the most fundamental rules in metabolic ecology is the allometric equation, which is a power-law scaling that describes the connection between body measurements and body size. The biological dynamics of this essentially empirical…

其他定量生物学 · 定量生物学 2024-05-14 Jia-Xu Han , Zhuangdong Bai , Rui-Wu Wang

Traditional metrics like accuracy, F1-score, and precision are frequently used to evaluate machine learning models, however they may not be sufficient for evaluating performance on tiny, unbalanced, or high-dimensional datasets. A…

机器学习 · 计算机科学 2024-12-11 Serzhan Ossenov

Ecologists have long argued about the strength of density dependence and population regulation, respectively defined as the short-term and long-term rates of return to equilibrium. Here, I give three arguments for the intractability of…

种群与进化 · 定量生物学 2024-12-24 Evan C. Johnson

In recent years, with the rapid development of science and technology, heterogeneous treatment effects have emerged as a focal research topic in statistics, econometrics, and sociology. This paper investigates HTE through semiparametric…

统计方法学 · 统计学 2025-07-21 Jichang Yu , Wenjing Chang , Peichao Yu , Lijun Chen , Yuanshan Wu

We present a model for continuous cell culture coupling intra-cellular metabolism to extracellular variables describing the state of the bioreactor, taking into account the growth capacity of the cell and the impact of toxic byproduct…

分子网络 · 定量生物学 2017-11-21 Jorge Fernandez-de-Cossio-Diaz , Kalet León , Roberto Mulet

Mammalian brains span about 4 orders of magnitude in cortical volume and have to operate in different environments that require diverse behavioral skills. Despite these geometric and behavioral diversities, the examination of cerebral…

神经元与认知 · 定量生物学 2014-05-19 Jan Karbowski

When developing and assessing density functional theory methods, a finite basis set is usually employed. In most cases, however, the issue of basis set dependency is neglected. Here, we assess several basis sets and functionals. In…

化学物理 · 物理学 2007-05-23 A. Daniel Boese , Jan M. L. Martin , Nicholas C. Handy

Non-interacting systems with bounded disorder have been shown to exhibit sharp density of states peaks at the band edge which coincide with an energy range of abruptly suppressed localization. Recent work has shown that these features also…

强关联电子 · 物理学 2016-04-20 P. Daley , R. Wortis

We explore the possibility of putting constraints on quintessence models with large-scale structure observations. In particular we compute the linear and second order growth rate of the fluctuations in different flavors of quintessence…

天体物理学 · 物理学 2009-11-06 K. Benabed , F. Bernardeau

Why are large, complex ecosystems stable? Both theory and simulations of current models predict the onset of instability with growing size and complexity, so for decades it has been conjectured that ecosystems must have some unidentified…

种群与进化 · 定量生物学 2016-08-11 Samuel Johnson , Virginia Domínguez-García , Luca Donetti , Miguel A. Muñoz