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Optimization over trained machine learning models has applications including: verification, minimizing neural acquisition functions, and integrating a trained surrogate into a larger decision-making problem. This paper formulates and solves…

Machine learning on graphs has made substantial progress across domains such as molecular property prediction and chip design. Yet benchmarking practices remain fragmented, often relying on narrow, task-specific datasets and inconsistent…

International Classification of Diseases (ICD) is a globally recognized coding system that records diagnostic events during each patient encounter, providing a standardized data foundation for various clinical tasks. However, the irregular…

Repetitive DNA (repeats) poses significant challenges for accurate and efficient genome assembly and sequence alignment. This is particularly true for metagenomic data, where genome dynamics such as horizontal gene transfer, gene…

机器学习 · 计算机科学 2024-02-15 Ali Azizpour , Advait Balaji , Todd J. Treangen , Santiago Segarra

Graph edit distance (GED) is a powerful and flexible graph matching paradigm that can be used to address different tasks in structural pattern recognition, machine learning, and data mining. In this paper, some new binary linear programming…

数据结构与算法 · 计算机科学 2015-05-22 Julien Lerouge , Zeina Abu-Aisheh , Romain Raveaux , Pierre Héroux , Sébastien Adam

In this paper, we propose an end-to-end graph learning framework, namely Deep Iterative and Adaptive Learning for Graph Neural Networks (DIAL-GNN), for jointly learning the graph structure and graph embeddings simultaneously. We first cast…

机器学习 · 计算机科学 2019-12-18 Yu Chen , Lingfei Wu , Mohammed J. Zaki

We address the correspondence search problem among multiple graphs with complex properties while considering the matching consistency. We describe each pair of graphs by combining multiple attributes, then jointly match them in a unified…

计算机视觉与模式识别 · 计算机科学 2018-03-16 Han-Mu Park , Kuk-Jin Yoon

This paper provides a new similarity detection algorithm. Given an input set of multi-dimensional data points, where each data point is assumed to be multi-dimensional, and an additional reference data point for similarity finding, the…

人工智能 · 计算机科学 2017-07-12 Yariv Aizenbud , Amir Averbuch , Gil Shabat , Guy Ziv

Data-efficient image classification is a challenging task that aims to solve image classification using small training data. Neural network-based deep learning methods are effective for image classification, but they typically require…

神经与进化计算 · 计算机科学 2022-12-05 Ying Bi , Bing Xue , Mengjie Zhang

The rise of graph analytic systems has created a need for ways to measure and compare the capabilities of these systems. Graph analytics present unique scalability difficulties. The machine learning, high performance computing, and visual…

Graph kernels are kernel methods measuring graph similarity and serve as a standard tool for graph classification. However, the use of kernel methods for node classification, which is a related problem to graph representation learning, is…

机器学习 · 计算机科学 2019-10-08 Yu Tian , Long Zhao , Xi Peng , Dimitris N. Metaxas

We consider multivariate two-sample tests of means, where the location shift between the two populations is expected to be related to a known graph structure. An important application of such tests is the detection of differentially…

定量方法 · 定量生物学 2014-05-16 Laurent Jacob , Pierre Neuvial , Sandrine Dudoit

Graph structure learning aims to learn connectivity in a graph from data. It is particularly important for many computer vision related tasks since no explicit graph structure is available for images for most cases. A natural way to…

计算机视觉与模式识别 · 计算机科学 2022-12-26 Yaohua Wang , FangYi Zhang , Ming Lin , Senzhang Wang , Xiuyu Sun , Rong Jin

We use a tensor unfolding technique to prove a new identifiability result for discrete bipartite graphical models, which have a bipartite graph between an observed and a latent layer. This model family includes popular models such as…

统计理论 · 数学 2025-01-22 Yuqi Gu

Dynamic graph learning is crucial for modeling real-world systems with evolving relationships and temporal dynamics. However, the lack of a unified benchmark framework in current research has led to inaccurate evaluations of dynamic graph…

机器学习 · 计算机科学 2024-01-15 Yusen Zhang

Graphs are widely used for describing systems made up of many interacting components and for understanding the structure of their interactions. Various statistical models exist, which describe this structure as the result of a combination…

统计方法学 · 统计学 2021-06-28 Louis Duvivier , Rémy Cazabet , Céline Robardet

Semi-supervised node classification on graphs is an important research problem, with many real-world applications in information retrieval such as content classification on a social network and query intent classification on an e-commerce…

机器学习 · 计算机科学 2022-03-29 Zhihao Wen , Yuan Fang , Zemin Liu

Graph anomaly detection (GAD) aims to identify anomalous graphs that significantly deviate from other ones, which has raised growing attention due to the broad existence and complexity of graph-structured data in many real-world scenarios.…

机器学习 · 计算机科学 2024-02-21 Jinyu Cai , Yunhe Zhang , Zhoumin Lu , Wenzhong Guo , See-kiong Ng

Graph are a ubiquitous data representation, as they represent a flexible and compact representation. For instance, the 3D structure of RNA can be efficiently represented as $\textit{2.5D graphs}$, graphs whose nodes are nucleotides and…

机器学习 · 计算机科学 2021-09-21 Vincent Mallet , Carlos G. Oliver , William L. Hamilton

A method for improving the efficiency of graph isomorphism testing is presented. The method uses the structure of the graph colored by vertex hash codes as a means of partitioning vertices into equivalence classes, which in turn reduces the…

数据结构与算法 · 计算机科学 2016-06-02 Thomas E. Portegys