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The dominant paradigm in origin of life research is that of an RNA world. However, despite experimental progress towards the spontaneous formation of RNA, the RNA world hypothesis still has its problems. Here, we introduce a novel…

分子网络 · 定量生物学 2017-01-31 Wim Hordijk

Autocatalytic sets are sets of entities that mutually catalyse each other's production through chemical reactions from a basic food source. Recently, the reflexively autocatalytic and food generated theory has introduced a formal definition…

适应与自组织系统 · 物理学 2020-09-15 Alessandro Ravoni

Autocatalytic Sets are reaction networks theorised as networks at the basis of life. Their main feature is the ability of spontaneously emerging and self-reproducing. The Reflexively and Food-generated theory provides a formal definition of…

分子网络 · 定量生物学 2020-10-19 Alessandro Ravoni

Explaining the origin of life requires us to explain how self-replication arises. To be specific, how can a self-replicating entity develop spontaneously from a chemical reaction system in which no reaction is self-replicating? Previously…

适应与自组织系统 · 物理学 2020-12-18 Yu Liu , David Sumpter

Background: Autocatalytic sets are often considered a necessary (but not sufficient) condition for the origin and early evolution of life. Although the idea of autocatalytic sets was already conceived of many years ago, only recently have…

分子网络 · 定量生物学 2012-06-06 Wim Hordijk , Mike Steel

The emergence of self-sustaining autocatalytic networks in chemical reaction systems has been studied as a possible mechanism for modelling how living systems first arose. It has been known for several decades that such networks will form…

分子网络 · 定量生物学 2020-11-24 Stuart Kauffman , Mike Steel

The emergence of autocatalytic sets of molecules seems to have played an important role in the origin of life context. Although the possibility to reproduce this emergence in laboratory has received considerable attention, this is still far…

适应与自组织系统 · 物理学 2015-02-04 Alessandro Filisetti , Marco Villani , Chiara Damiani , Alex Graudenzi , Andrea Roli , Wim Hordijk , Roberto Serra

Autocatalytic sets are self-catalyzing and self-sustaining chemical reaction networks that are believed to have played an important role in the origin of life. They have been studied extensively both theoretically as well as experimentally.…

分子网络 · 定量生物学 2023-03-06 Wim Hordijk

Self-sustaining autocatalytic networks play a central role in living systems, from metabolism at the origin of life, simple RNA networks, and the modern cell, to ecology and cognition. A collectively autocatalytic network that can be…

分子网络 · 定量生物学 2018-03-29 Mike Steel , Wim Hordijk

Autocatalytic systems are very often incorporated in the "origin of life" models, a connection that has been analyzed in the context of the classical hypercycles introduced by Manfred Eigen. We investigate the dynamics of certain networks…

动力系统 · 数学 2020-12-14 Gheorghe Craciun , Abhishek Deshpande , Badal Joshi , Polly Y. Yu

We determine conditions under which a random biochemical system is likely to contain a subsystem that is both autocatalytic and able to survive on some ambient `food' source. Such systems have previously been investigated for their…

分子网络 · 定量生物学 2007-05-23 Elchanan Mossel , Mike Steel

Given any finite and closed chemical reaction system, it is possible to efficiently determine whether or not it contains a `self-sustaining and collectively autocatalytic' subset of reactions, and to find such subsets when they exist.…

分子网络 · 定量生物学 2015-01-26 Mike Steel

This thesis broadly concerns the origins of life problem, pursuing a joint approach that combines general philosophical/conceptual reflection on the problem along with more detailed and formal scientific modelling work oriented in the…

其他定量生物学 · 定量生物学 2016-06-14 Benjamin John Shirt-Ediss

Over the last years, analyses performed on a stochastic model of catalytic reaction networks have provided some indications about the reasons why wet-lab experiments hardly ever comply with the phase transition typically predicted by…

计算工程、金融与科学 · 计算机科学 2013-10-01 Chiara Damiani , Alessandro Filisetti , Alex Graudenzi , Marco Villani , Roberto Serra

Autocatalysis lies at the heart of many (bio)chemical processes and is key to processes leading up to the origin of life. Two seemingly very different formalisms have emerged that define autocatalysis. Kauffman introduced collective…

分子网络 · 定量生物学 2026-05-26 Richard Golnik , Thomas Gatter , Wim Hordijk , Peter F. Stadler , Nicola Vassena

In previous work, RAF theory has been developed as a tool for making theoretical progress on the origin of life question, providing insight into the structure and occurrence of self-sustaining and collectively autocatalytic sets within…

分子网络 · 定量生物学 2013-10-18 Joshua I Smith , Mike Steel , Wim Hordijk

Self-replicability is the unique attribute observed in all the living organisms and the question how the life was physically initiated could be equivalent to the question how self-replicating informative polymers were formed in the abiotic…

生物物理 · 物理学 2023-05-24 Yasuji Sawada , Yasukazu Daigaku , Kenji Toma

All living systems -- from the origin of life to modern cells -- rely on a set of biochemical reactions that are simultaneously self-sustaining and autocatalytic. This notion of an autocatalytic set has been formalized graph-theoretically…

分子网络 · 定量生物学 2016-05-13 Wim Hordijk , Mike Steel

One of the main goals of Artificial Life is to research the conditions for the emergence of life, not necessarily as it is, but as it could be. Artificial Chemistries are one of the most important tools for this purpose because they provide…

适应与自组织系统 · 物理学 2021-12-08 Germán Kruszewski , Tomas Mikolov

A universal feature of the biochemistry of any living system is that all the molecules and catalysts that are required for reactions of the system can be built up from an available food source by repeated application of reactions from…

分子网络 · 定量生物学 2013-07-11 Wim Hordijk , Peter R. Wills , Mike Steel
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