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Genome sequence alignment is the core of many biological applications. The advancement of sequencing technologies produces a tremendous amount of data, making sequence alignment a critical bottleneck in bioinformatics analysis. The existing…

硬件体系结构 · 计算机科学 2023-01-26 Weihong Xu , Saransh Gupta , Niema Moshiri , Tajana Rosing

(Abridged) We have developed a numerical software library for collisionless N-body simulations named "Phantom-GRAPE" which highly accelerates force calculations among particles by use of a new SIMD instruction set extension to the x86…

天体物理仪器与方法 · 物理学 2015-06-04 Ataru Tanikawa , Kohji Yoshikawa , Keigo Nitadori , Takashi Okamoto

The proliferation of high-throughput sequencing machines ensures rapid generation of up to billions of short nucleotide fragments in a short period of time. This massive amount of sequence data can quickly overwhelm today's storage and…

分布式、并行与集群计算 · 计算机科学 2018-11-13 Subho S. Banerjee , Mohamed El-Hadedy , Jong Bin Lim , Zbigniew T. Kalbarczyk , Deming Chen , Steve Lumetta , Ravishankar K. Iyer

The Number Theoretic Transform (NTT) is a fundamental operation in privacy-preserving technologies, particularly within fully homomorphic encryption (FHE). The efficiency of NTT computation directly impacts the overall performance of FHE,…

硬件体系结构 · 计算机科学 2025-07-18 George Alexakis , Dimitrios Schoinianakis , Giorgos Dimitrakopoulos

Efficient ordinary differential equation solvers for chemical kinetics must take into account the available thread and instruction-level parallelism of the underlying hardware, especially on many-core coprocessors, as well as the numerical…

计算物理 · 物理学 2018-03-28 Christopher P. Stone , Andrew T. Alferman , Kyle E. Niemeyer

Xilinx's AI Engine is a recent industry example of energy-efficient vector processing that includes novel support for 2D SIMD datapaths and shuffle interconnection network. The current approach to programming the AI Engine relies on a C/C++…

分布式、并行与集群计算 · 计算机科学 2020-06-03 Prasanth Chatarasi , Stephen Neuendorffer , Samuel Bayliss , Kees Vissers , Vivek Sarkar

In recent years, the data collected for artificial intelligence has grown to an unmanageable amount. Particularly within industrial applications, such as autonomous vehicles, model training computation budgets are being exceeded while model…

计算机视觉与模式识别 · 计算机科学 2024-09-24 Maying Shen , Nadine Chang , Sifei Liu , Jose M. Alvarez

Approximate query processing (AQP) is an interesting alternative for exact query processing. It is a tool for dealing with the huge data volumes where response time is more important than perfect accuracy (this is typically the case during…

分布式、并行与集群计算 · 计算机科学 2015-05-11 Witold Andrzejewski , Artur Gramacki , Jarosław Gramacki

Recently Arm introduced a new instruction set called Scalable Vector Extension (SVE), which supports vector lengths up to 2048 bits. While SVE hardware will not be generally available until about 2021, we believe that future SVE-based…

高能物理 - 格点 · 物理学 2019-04-09 Nils Meyer , Dirk Pleiter , Stefan Solbrig , Tilo Wettig

We present the APE (Array Processor Experiment) project for the development of dedicated parallel computers for numerical simulations in lattice gauge theories. While APEmille is a production machine in today's physics simulations at…

Operations typically used in machine learning al-gorithms (e.g. adds and soft max) can be implemented bycompact analog circuits. Analog Application-Specific Integrated Circuit (ASIC) designs that implement these algorithms using techniques…

神经与进化计算 · 计算机科学 2021-06-24 Shih-Chii Liu , John Paul Strachan , Arindam Basu

Vector processing has become commonplace in today's CPU microarchitectures. Vector instructions improve performance and energy which is crucial for resource-constraint mobile devices. The research community currently lacks a comprehensive…

硬件体系结构 · 计算机科学 2023-09-07 Alireza Khadem , Daichi Fujiki , Nishil Talati , Scott Mahlke , Reetuparna Das

The ever-increasing quest for data-level parallelism and variable precision in ubiquitous multimedia and Deep Neural Network (DNN) applications has motivated the use of Single Instruction, Multiple Data (SIMD) architectures. To alleviate…

硬件体系结构 · 计算机科学 2020-11-03 Zahra Ebrahimi , Salim Ullah , Akash Kumar

Building on the previous work of Lee et al. and Ferdinand et al. on coded computation, we propose a sequential approximation framework for solving optimization problems in a distributed manner. In a distributed computation system, latency…

信息论 · 计算机科学 2017-10-26 Jingge Zhu , Ye Pu , Vipul Gupta , Claire Tomlin , Kannan Ramchandran

The eigenvalue decomposition (EVD) of (a batch of) Hermitian matrices of order two has a role in many numerical algorithms, of which the one-sided Jacobi method for the singular value decomposition (SVD) is the prime example. In this paper…

数值分析 · 数学 2023-10-31 Vedran Novaković

Deep Learning (DL) algorithms are the central focus of modern machine learning systems. As data volumes keep growing, it has become customary to train large neural networks with hundreds of millions of parameters to maintain enough capacity…

分布式、并行与集群计算 · 计算机科学 2020-03-03 Beidi Chen , Tharun Medini , James Farwell , Sameh Gobriel , Charlie Tai , Anshumali Shrivastava

This study presents the Cartesian Accumulative Matrix Pipeline (CAMP) architecture, a novel approach designed to enhance matrix multiplication in Vector Architectures (VAs) and Single Instruction Multiple Data (SIMD) units. CAMP improves…

The support vector machines (SVM) is one of the most widely used and practical optimization based classification models in machine learning because of its interpretability and flexibility to produce high quality results. However, the big…

机器学习 · 计算机科学 2020-11-06 Ehsan Sadrfaridpour , Korey Palmer , Ilya Safro

Stencil computation is one of the most important kernels in various scientific and engineering applications. A variety of work has focused on vectorization and tiling techniques, aiming at exploiting the in-core data parallelism and data…

分布式、并行与集群计算 · 计算机科学 2021-03-19 Kun Li , Liang Yuan , Yunquan Zhang , Yue Yue , Hang Cao , Pengqi Lu

The growing demand for edge-AI systems requires arithmetic units that balance numerical precision, energy efficiency, and compact hardware while supporting diverse formats. Posit arithmetic offers advantages over floating- and fixed-point…

硬件体系结构 · 计算机科学 2026-01-27 Sonu Kumar , Lavanya Vinnakota , Mukul Lokhande , Santosh Kumar Vishvakarma , Adam Teman