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This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

分子网络 · 定量生物学 2007-05-23 Eduardo D. Sontag

With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse…

机器学习 · 计算机科学 2021-11-09 David Ahmedt-Aristizabal , Mohammad Ali Armin , Simon Denman , Clinton Fookes , Lars Petersson

We introduce the concept of natural connectivity as a robustness measure of complex networks. The natural connectivity has a clear physical meaning and a simple mathematical formulation. It characterizes the redundancy of alternative paths…

统计力学 · 物理学 2008-02-20 Jun Wu , Yue-Jin Tan , Hong-Zhong Deng , Yong Li , Bin Liu , Xin Lv

We consider random graphs on the set of $N^2$ vertices placed on the discrete $2$-dimensional torus. The edges between pairs of vertices are independent, and their probabilities decay with the distance $\rho$ between these vertices as…

概率论 · 数学 2023-08-16 Vasilii Goriachkin , Tatyana Turova

One intriguing property of deep neural networks (DNNs) is their inherent vulnerability to backdoor attacks -- a trojan model responds to trigger-embedded inputs in a highly predictable manner while functioning normally otherwise. Despite…

机器学习 · 计算机科学 2021-08-11 Zhaohan Xi , Ren Pang , Shouling Ji , Ting Wang

The \emph{$k$-restricted edge-connectivity} of a graph $G$, denoted by $\lambda_k(G)$, is defined as the minimum size of an edge set whose removal leaves exactly two connected components each containing at least $k$ vertices. This graph…

数据结构与算法 · 计算机科学 2016-09-20 Luis Pedro Montejano , Ignasi Sau

Given a network, the critical node detection problem finds a subset of nodes whose removal disrupts the network connectivity. Since many real-world systems are naturally modeled as graphs, assessing the vulnerability of the network is…

离散数学 · 计算机科学 2025-12-02 Tuguldur Bayarsaikhan , Altannar Chinchuluun , Ashwin Arulselvan , Panos Pardalos

Graph neural networks (GNNs) have become increasingly popular for classification tasks on graph-structured data. Yet, the interplay between graph topology and feature evolution in GNNs is not well understood. In this paper, we focus on…

机器学习 · 计算机科学 2023-10-27 Vignesh Kothapalli , Tom Tirer , Joan Bruna

Graph neural networks (GNNs) learn node representations by passing and aggregating messages between neighboring nodes. GNNs have been applied successfully in several application domains and achieved promising performance. However, GNNs…

机器学习 · 计算机科学 2021-12-14 Zeyu Zhang , Yulong Pei

In this paper, we investigate some basic connectivity problems in directed graphs (digraphs). Let $G$ be a digraph with $m$ edges and $n$ vertices, and let $G\setminus e$ be the digraph obtained after deleting edge $e$ from $G$. As a first…

数据结构与算法 · 计算机科学 2019-05-08 Loukas Georgiadis , Giuseppe F. Italiano , Nikos Parotsidis

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such…

机器学习 · 计算机科学 2020-06-22 Luca Franceschi , Mathias Niepert , Massimiliano Pontil , Xiao He

Modeling the behavior of coupled networks is challenging due to their intricate dynamics. For example in neuroscience, it is of critical importance to understand the relationship between the functional neural processes and anatomical…

机器学习 · 计算机科学 2021-04-20 Hongyuan You , Sikun Lin , Ambuj K. Singh

Centrality measures aim to indicate who is important in a network. Various notions of `being important' give rise to different centrality measures. In this paper, we study how important the central vertices are for the connectivity…

概率论 · 数学 2024-11-20 Manish Pandey , Remco van der Hofstad

Modern histopathological image analysis relies on the segmentation of cell structures to derive quantitative metrics required in biomedical research and clinical diagnostics. State-of-the-art deep learning approaches predominantly apply…

图像与视频处理 · 电气工程与系统科学 2022-01-12 Yoav Alon , Huiyu Zhou

Let $\Lambda(T)$ denote the set of leaves in a tree $T$. One natural problem is to look for a spanning tree $T$ of a given graph $G$ such that $\Lambda(T)$ is as large as possible. This problem is called maximum leaf number, and it is a…

组合数学 · 数学 2026-02-19 Peter Bradshaw , Tomáš Masařík , Jana Novotná , Ladislav Stacho

The central nervous system is composed of many individual units -- from cells to areas -- that are connected with one another in a complex pattern of functional interactions that supports perception, action, and cognition. One natural and…

神经元与认知 · 定量生物学 2017-04-03 Ann E. Sizemore , Danielle S. Bassett

A random graph evolution based on the interactions of N vertices is studied. During the evolution both the preferential attachment method and the uniform choice of vertices are allowed. The weight of a vertex means the number of its…

概率论 · 数学 2014-05-07 István Fazekas , Bettina Porvázsnyik

Recent studies have shown that graph neural networks (GNNs) are vulnerable to adversarial attacks, posing significant challenges to their deployment in safety-critical scenarios. This vulnerability has spurred a growing focus on designing…

机器学习 · 计算机科学 2025-05-27 Tao Wu , Canyixing Cui , Xingping Xian , Shaojie Qiao , Chao Wang , Lin Yuan , Shui Yu

The maximum genus $\gamma_M(G)$ of a graph G is the largest genus of an orientable surface into which G has a cellular embedding. Combinatorially, it coincides with the maximum number of disjoint pairs of adjacent edges of G whose removal…

组合数学 · 数学 2015-01-30 Michal Kotrbcik , Martin Skoviera

We analyse graphs in which each vertex is assigned random coordinates in a geometric space of arbitrary dimensionality and only edges between adjacent points are present. The critical connectivity is found numerically by examining the size…

统计力学 · 物理学 2009-11-07 Jesper Dall , Michael Christensen