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We introduce a novel approach to the automated termination analysis of computer programs: we use neural networks to represent ranking functions. Ranking functions map program states to values that are bounded from below and decrease as a…

机器学习 · 计算机科学 2022-09-07 Mirco Giacobbe , Daniel Kroening , Julian Parsert

Continuous-time Markov chains are frequently used as stochastic models for chemical reaction networks, especially in the growing field of systems biology. A fundamental problem for these Stochastic Chemical Reaction Networks (SCRNs) is to…

A central challenge in neuroscience is to understand neural computations and circuit mechanisms that underlie the encoding of ethologically relevant, natural stimuli. In multilayered neural circuits, nonlinear processes such as synaptic…

神经元与认知 · 定量生物学 2017-02-09 Lane T. McIntosh , Niru Maheswaranathan , Aran Nayebi , Surya Ganguli , Stephen A. Baccus

In this work we present an efficient and practically implementable approach for the application of reinforcement learning (RL)-based control in chemical process systems. This is an area that has yet to widely adopt RL-based control largely…

系统与控制 · 电气工程与系统科学 2026-05-21 Austin Braniff , Yuhe Tian

Many kinds of data are naturally amenable to being treated as sequences. An example is text data, where a text may be seen as a sequence of words. Another example is clickstream data, where a data instance is a sequence of clicks made by a…

机器学习 · 计算机科学 2019-10-31 Abhishek Ghose

Chemically reacting flows are common in engineering, such as hypersonic flow, combustion, explosions, manufacturing processes and environmental assessments. For combustion, the number of reactions can be significant (over 100) and due to…

机器学习 · 计算机科学 2021-04-06 Thomas S. Brown , Harbir Antil , Rainald Löhner , Fumiya Togashi , Deepanshu Verma

Retrosynthesis is one of the fundamental problems in organic chemistry. The task is to identify reactants that can be used to synthesize a specified product molecule. Recently, computer-aided retrosynthesis is finding renewed interest from…

机器学习 · 计算机科学 2020-01-07 Hanjun Dai , Chengtao Li , Connor W. Coley , Bo Dai , Le Song

Neural Networks (NNs) are effective models for refining the accuracy of molecular dynamics, opening up new fields of application. Typically trained bottom-up, atomistic NN potential models can reach first-principle accuracy, while…

化学物理 · 物理学 2025-05-19 Paul Fuchs , Stephan Thaler , Sebastien Röcken , Julija Zavadlav

Molecular computation in chemical reaction networks (CRNs) now constitutes a foundational framework for designing programmable biological systems. However, prevailing design methodologies primarily treat parallelism of chemical reactions as…

分子网络 · 定量生物学 2025-12-09 Renlei Jiang , Chuanhou Gao , Denis Dochain

Discrete chemical reaction networks formalize the interactions of molecular species in a well-mixed solution as stochastic events. Given their basic mathematical and physical role, the computational power of chemical reaction networks has…

计算复杂性 · 计算机科学 2023-07-07 Austin Luchsinger , David Doty , David Soloveichik

This paper investigates the connections between two state of the art classifiers: decision forests (DFs, including decision jungles) and convolutional neural networks (CNNs). Decision forests are computationally efficient thanks to their…

计算机视觉与模式识别 · 计算机科学 2016-03-04 Yani Ioannou , Duncan Robertson , Darko Zikic , Peter Kontschieder , Jamie Shotton , Matthew Brown , Antonio Criminisi

Statistical machine learning algorithms have achieved state-of-the-art results on benchmark datasets, outperforming humans in many tasks. However, the out-of-distribution data and confounder, which have an unpredictable causal relationship,…

计算机视觉与模式识别 · 计算机科学 2022-10-31 Changjie Lu

Identifying unique characteristics in a network through comparison with another network is an essential network analysis task. For example, with networks of protein interactions obtained from normal and cancer tissues, we can discover…

机器学习 · 计算机科学 2022-02-16 Takanori Fujiwara , Jian Zhao , Francine Chen , Yaoliang Yu , Kwan-Liu Ma

Most of previous machine learning algorithms are proposed based on the i.i.d. hypothesis. However, this ideal assumption is often violated in real applications, where selection bias may arise between training and testing process. Moreover,…

计算机视觉与模式识别 · 计算机科学 2018-08-24 Zheyan Shen , Peng Cui , Kun Kuang , Bo Li , Peixuan Chen

We propose a direct optimization framework for learning reduced and sparse chemical reaction networks (CRNs) from time-series trajectory data. In contrast to widely used indirect methods-such as those based on sparse identification of…

分子网络 · 定量生物学 2025-08-27 Maurice Filo , Mustafa Khammash

This paper presents a proof-of-concept method for classifying chemical compounds directly from NMR data without doing structure elucidation. This can help to reduce time in finding good structure candidates, as in most cases matching must…

Reaction-diffusion (Turing) systems are fundamental to the formation of spatial patterns in nature and engineering. These systems are governed by a set of non-linear partial differential equations containing parameters that determine the…

机器学习 · 计算机科学 2022-11-28 Jordon Kho , Winston Koh , Jian Cheng Wong , Pao-Hsiung Chiu , Chin Chun Ooi

Graph neural networks (GNNs) are the predominant approach for graph-based machine learning. While neural networks have shown great performance at learning useful representations, they are often criticized for their limited high-level…

机器学习 · 计算机科学 2024-07-09 Markus Zopf , Francesco Alesiani

Traditional recurrent neural networks (RNNs) have a fixed, finite number of memory cells. In theory (assuming bounded range and precision), this limits their formal language recognition power to regular languages, and in practice, RNNs have…

计算与语言 · 计算机科学 2023-03-14 Brian DuSell , David Chiang

This paper reveal the selective rotation in the CNNs' forward processing. It elucidates the activation function as a discerning mechanism that unifies and quantizes the rotational aspects of the input data. Experiments show how this defined…

机器学习 · 计算机科学 2023-12-04 Peixin Tian
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