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We present a nonparametric framework to model a short sequence of probability distributions that vary both due to underlying effects of sequential progression and confounding noise. To distinguish between these two types of variation and…

统计方法学 · 统计学 2019-02-08 Jonas Mueller , Tommi Jaakkola , David Gifford

Natural ecosystems are characterized by striking diversity of form and functions and yet exhibit deep symmetries emerging across scales of space, time and organizational complexity. Species-area relationships and species-abundance…

The basic and effective reproduction numbers are widely used metrics for characterizing the dynamics of infectious disease epidemics. However, the interpretation of these numbers is based on the assumption of homogeneous mixing and may not…

种群与进化 · 定量生物学 2026-03-24 Zahra Ghadiri , Jari Saramäki , Takayuki Hiraoka

We consider random recursive trees that are grown via community modulated schemes that involve random attachment or degree based attachment. The aim of this paper is to derive general techniques based on continuous time embedding to study…

概率论 · 数学 2020-08-05 Shankar Bhamidi , Ruituo Fan , Nicolas Fraiman , Andrew Nobel

It is well known that the different cell-division models, such as Timer, Sizer, and Adder, can be distinguished based on the correlations between different single-cell-level quantities such as birth-size, division-time, division-size, and…

统计力学 · 物理学 2025-10-29 Vikas , Rahul Marathe , Anjan Roy

Motile organisms can form stable agglomerates such as cities or colonies. In the outbreak of a highly contagious disease, the control of large-scale epidemic spread depends on factors like the number and size of agglomerates, travel rate…

种群与进化 · 定量生物学 2023-04-03 Pablo de Castro , Felipe Urbina , Ariel Norambuena , Francisca Guzmán-Lastra

In large populations, multiple beneficial mutations may be simultaneously spreading. In asexual populations, these mutations must either arise on the same background or compete against each other. In sexual populations, recombination can…

种群与进化 · 定量生物学 2013-12-19 D. B. Weissman , O. Hallatschek

In this paper, based on the epidemiological microparasite model, a parasite-host model is established by considering the fear effect of susceptible individuals on infectors. We explored the pattern formation with the help of numerical…

种群与进化 · 定量生物学 2022-05-19 Yong Ye , Yi Zhao , Jiaying Zhou

As a population grows, spreading to new environments may favor specialization. In this paper, we introduce and explore a model for specialization at the front of a colony expanding synchronously into new territory. We show through numerical…

生物物理 · 物理学 2023-09-14 Lauren H. Li , Mehran Kardar

In most biological studies and processes, cell proliferation and population dynamics play an essential role. Due to this ubiquity, a multitude of mathematical models has been developed to describe these processes. While the simplest models…

种群与进化 · 定量生物学 2012-02-23 J. Hasenauer , D. Schittler , F. Allgower

This paper addresses the question of how population diffusion affects the formation of the spatial patterns in the spatial epidemic model by Turing mechanisms. In particular, we present theoretical analysis to results of the numerical…

种群与进化 · 定量生物学 2009-09-29 Quan-Xing Liu , Zhen Jin

We study the evolution of recombination using a microscopic model developed within the frame of the theory of quantitative traits. Two components of fitness are considered: a static one that describes adaptation to environmental factors not…

种群与进化 · 定量生物学 2007-05-23 Franco Bagnoli , Carlo Guardiani

The shape of large on-lattice Eden clusters grown from a single seed is ruled by the underlying lattice anisotropy. This is reflected on the linear growth with time of the interface width ($w\sim t$), in contrast with the KPZ universality…

统计力学 · 物理学 2011-03-09 L. R. Paiva , S. C. Ferreira

A stochastic model, the product of a circulant matrix and a random normal vector, is shown to produce an evolutive long memory time series with a power law spectral density. The distribution of the time series, a beta location scale family…

综合数学 · 数学 2026-02-26 Robert Kimberk

We study a family of selection-mutation models of a sexual population structured by a phenotypical trait. The main feature of these models is the asymmetric trait heredity or fecundity between the parents : we assume that each individual…

偏微分方程分析 · 数学 2022-04-11 Benoît Perthame , Martin Strugarek , Cécile Taing

We develop a stochastic framework for viral population dynamics at the cellular level that explicitly incorporates the replication cycle with random stage durations. The model is formulated as a structured birth-death process coupled with a…

种群与进化 · 定量生物学 2026-05-13 Seong Jun Park

Many cellular responses to surrounding cues require temporally concerted transcriptional regulation of multiple genes. In prokaryotic cells, a single-input-module motif with one transcription factor regulating multiple target genes can…

亚细胞过程 · 定量生物学 2019-06-19 Jingyu Zhang , Hengyu Chen , Ruoyan Li , David A. Taft , Guang Yao , Fan Bai , Jianhua Xing

Environmental changes greatly influence the evolution of populations. Here, we study the dynamics of a population of two strains, one growing slightly faster than the other, competing for resources in a time-varying binary environment…

种群与进化 · 定量生物学 2020-07-28 Ami Taitelbaum , Robert West , Michael Assaf , Mauro Mobilia

We live in a time where climate models predict future increases in environmental variability and biological invasions are becoming increasingly frequent. A key to developing effective responses to biological invasions in increasingly…

种群与进化 · 定量生物学 2015-12-16 Sebastian J. Schreiber , Maureen E. Ryan

I study a population model in which the reproduction rate lambda is inherited with mutation, favoring fast reproducers in the short term, but conflicting with a process that eliminates agglomerations of individuals. The model is a variant…

统计力学 · 物理学 2021-06-02 Ronald Dickman