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Signaling networks are designed to sense an environmental stimulus and adapt to it. We propose and study a minimal model of signaling network that can sense and respond to external stimuli of varying strength in an adaptive manner. The…

分子网络 · 定量生物学 2010-09-14 Subhadip Raychaudhuri

Receptor-induced apoptosis is a complex signal transduction pathway involving numerous protein/protein interactions and post-transcriptional modifications. The response to death receptor stimulation varies significantly from one cell line…

定量方法 · 定量生物学 2017-12-20 François Bertaux , Dirk Drasdo , Gregory Batt

Apoptosis is an important area of research because of its role in keeping a mature multicellular organism's number of cells constant hence, ensuring that the organism does not have cell accumulation that may transform into cancer with…

分子网络 · 定量生物学 2010-10-01 Elife Zerrin Bagci , Sercan Murat Sen , Mehmet Cihan Camurdan

BH3 mimetics have been proposed as new anticancer therapeutics. They target anti-apoptotic Bcl-2 proteins, up-regulation of which has been implicated in the resistance of many cancer cells, particularly leukemia and lymphoma cells, to…

分子网络 · 定量生物学 2010-07-22 Joanna Skommer , Tom Brittain , Subhadip Raychaudhuri

Interactions between individual members of the B-cell lymphoma 2 (Bcl-2) family of proteins form a regulatory network governing mitochondrial outer membrane permeabilization (MOMP). Bcl-2 family initiated MOMP causes release of the…

分子网络 · 定量生物学 2013-05-20 Tomas Tokar , Jozef Ulicny

Neurostimulation technologies have seen a recent surge in interest from the neuroscience and controls communities alike due to their proven potential to treat conditions such as Parkinson's Disease, and depression. The provided stimulation…

系统与控制 · 电气工程与系统科学 2023-01-03 Gagan Acharya , Sebastian F. Ruf , Erfan Nozari

Apoptosis is a mechanism of programmed cell death in which cells engage in a controlled demolition and prepare to be digested without damaging their environment. In normal conditions apoptosis is repressed, until it is irreversibly induced…

分子网络 · 定量生物学 2021-05-18 Sol M. Fernández Arancibia , Hernán E. Grecco , Luis G. Morelli

The process of programmed cell death, namely apoptosis, is a natural mechanism that regulates healthy tissue, multicellular structures, and homeostasis. An improved understanding of apoptosis can significantly enhance our knowledge of…

Apoptosis, or genetically programmed cell death, is a crucial cellular process that maintains the balance between life and death in cells. The precise molecular mechanism of apoptosis signaling and how these two pathways are differentially…

分子网络 · 定量生物学 2009-02-06 S. Raychaudhuri , E. Willgohs , T. Nguyen , E. M. Khan , T. Goldkorn

Experiments show that spike-triggered stimulation performed with Bidirectional Brain-Computer-Interfaces (BBCI) can artificially strengthen connections between separate neural sites in motor cortex (MC). What are the neuronal mechanisms…

神经元与认知 · 定量生物学 2017-04-12 Guillaume Lajoie , Nedialko I. Krouchev , John F. Kalaska , Adrienne L. Fairhall , Eberhard E. Fetz

Cellular responses to death-promoting stimuli typically proceed through a differentiated multistage process, involving a lag phase, extensive death, and potential adaptation. Deregulation of this chain of events is at the root of many…

细胞行为 · 定量生物学 2010-12-03 Jose M. G. Vilar

Apoptosis is a highly regulated cell death mechanism involved in many physiological processes. A key component of extrinsically activated apoptosis is the death receptor Fas, which, on binding to its cognate ligand FasL, oligomerize to form…

细胞行为 · 定量生物学 2014-04-10 Kenneth L. Ho , Heather A. Harrington

Death ligand mediated apoptotic activation is a mode of programmed cell death that is widely used in cellular and physiological situations. Interest in studying death ligand induced apoptosis has increased due to the promising role of…

细胞行为 · 定量生物学 2015-02-02 Subhadip Raychaudhuri

Apoptosis is a complex pathway regulated by the concerted action of multiple pro- and anti-apoptotic molecules. The intrinsic (mitochondrial) pathway of apoptosis is governed up-stream of mitochondria, by the family of Bcl-2 proteins, and…

分子网络 · 定量生物学 2011-05-13 Joanna Skommer , Somkanya C Das , Arjun Nair , Thomas Brittain , Subhadip Raychaudhuri

Selective control in a population is the ability to control a member of the population while leaving the other members relatively unaffected. The concept of selective control is developed using cell death or apoptosis in heterogeneous cell…

Mitochondrial outer membrane permeabilization (MOMP) is one of the most important points, in majority of apoptotic signaling cascades. Decision mechanism controlling whether the MOMP occurs or not, is formed by an interplay between members…

分子网络 · 定量生物学 2012-12-21 Tomas Tokar , Zdenko Turcan , Jozef Ulicny

Intracellular networks process cellular-level information and control cell fate. They can be computationally modeled using Boolean networks, which are implicit-time causal models of discrete binary events. These networks can be embedded in…

分子网络 · 定量生物学 2025-01-28 John Metzcar , Katie Pletz , Heber L. Rocha , Jordan C Rozum

Living systems process sensory data to facilitate adaptive behaviour. A given sensor can be stimulated as the result of internally driven activity, or by purely external (environmental) sources. It is clear that these inputs are processed…

神经与进化计算 · 计算机科学 2022-05-16 James Garner , Matthew Egbert

In the past decade, the cell-type specific connectivity and activity of local cortical networks have been characterized experimentally to some detail. In parallel, modeling has been established as a tool to relate network structure to…

神经元与认知 · 定量生物学 2011-06-29 Tobias C. Potjans , Markus Diesmann

Traditional top-down robotic design often lacks the adaptability needed to handle real-world complexities, prompting the need for more flexible approaches. Therefore, this study introduces a novel cellular plasticity model tailored for…

机器人学 · 计算机科学 2024-08-13 Trevor R. Smith , Thomas J. Smith , Nicholas S. Szczecinski , Sergiy Yakovenko , Yu Gu
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