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The effectiveness of contrastive learning methods has been widely recognized in the field of graph learning, especially in contexts where graph data often lack labels or are difficult to label. However, the application of these methods to…

机器学习 · 计算机科学 2026-01-16 Qiang Yu , Xinran Cheng , Shiqiang Xu , Chuanyi Liu

The backpropagation algorithm has experienced remarkable success in training large-scale artificial neural networks; however, its biological plausibility has been strongly criticized, and it remains an open question whether the brain…

神经与进化计算 · 计算机科学 2026-03-27 Bariscan Bozkurt , Cengiz Pehlevan , Alper T Erdogan

Networks are ubiquitous in biology where they encode connectivity patterns at all scales of organization, from molecular to the biome. However, biological networks are noisy due to the limitations of measurement technology and inherent…

Accurate models of the world are built upon notions of its underlying symmetries. In physics, these symmetries correspond to conservation laws, such as for energy and momentum. Yet even though neural network models see increasing use in the…

机器学习 · 计算机科学 2020-07-31 Miles Cranmer , Sam Greydanus , Stephan Hoyer , Peter Battaglia , David Spergel , Shirley Ho

We address the sensor network localization problem given noisy range measurements between pairs of nodes. We approach the non-convex maximum-likelihood formulation via a known simple convex relaxation. We exploit its favorable optimization…

最优化与控制 · 数学 2015-09-30 Cláudia Soares , João Xavier , João Gomes

When the scale of communication networks has been growing rapidly in the past decades, it becomes a critical challenge to extract fast and accurate estimation of key state parameters of network links, e.g., transmission delays and dropped…

网络与互联网体系结构 · 计算机科学 2018-12-04 Hao-Ting Wei , Sung-Hsien Hsieh , Wen-Liang Hwang , Chung-Shou Liao , Chun-Shien Lu

We formulate a strong equivalence between machine learning, artificial intelligence methods and the formulation of statistical data assimilation as used widely in physical and biological sciences. The correspondence is that layer number in…

人工智能 · 计算机科学 2017-07-06 Henry Abarbanel , Paul Rozdeba , Sasha Shirman

We present a novel deep learning approach to approximate the solution of large, sparse, symmetric, positive-definite linear systems of equations. These systems arise from many problems in applied science, e.g., in numerical methods for…

机器学习 · 计算机科学 2022-10-04 Ayano Kaneda , Osman Akar , Jingyu Chen , Victoria Kala , David Hyde , Joseph Teran

This paper investigates the consensus problem of multiple uncertain Lagrangian systems. Due to the discontinuity resulted from the switching topology, achieving consensus in the context of uncertain Lagrangian systems is challenging. We…

系统与控制 · 计算机科学 2017-07-13 Hanlei Wang

Motivation: Stochastic reaction networks are a widespread model to describe biological systems where the presence of noise is relevant, such as in cell regulatory processes. Unfortu-nately, in all but simplest models the resulting discrete…

In decentralized optimization over networks, each node in the network has a portion of the global objective function and the aim is to collectively optimize this function. Gradient tracking methods have emerged as a popular alternative for…

最优化与控制 · 数学 2023-12-13 Albert S. Berahas , Raghu Bollapragada , Shagun Gupta

By exploiting double-penalty terms for the primal subproblem, we develop a novel relaxed augmented Lagrangian method for solving a family of convex optimization problems subject to equality or inequality constraints. The method is then…

数值分析 · 数学 2025-06-16 Jianchao Bai , Linyuan Jia , Zheng Peng

Optimization problems with norm-bounding constraints arise in a variety of applications, including portfolio optimization, machine learning, and feature selection. A common approach to these problems involves relaxing the norm constraint…

最优化与控制 · 数学 2025-05-08 Danial Davarnia , Mohammadreza Kiaghadi

This study focuses on the problem of user satisfaction classification and proposes a framework based on graph neural networks to address the limitations of traditional methods in handling complex interaction relationships and…

人机交互 · 计算机科学 2025-11-07 Rui Liu , Runsheng Zhang , Shixiao Wang

Biological network alignment identifies topologically and functionally conserved regions between networks of different species. It encompasses two algorithmic steps: node cost function (NCF), which measures similarities between nodes in…

分子网络 · 定量生物学 2014-07-21 Joseph Crawford , Yihan Sun , Tijana Milenković

A major goal in genomics is to properly capture the complex dynamical behaviors of gene regulatory networks (GRNs). This includes inferring the complex interactions between genes, which can be used for a wide range of genomics analyses,…

分子网络 · 定量生物学 2023-01-18 Mohammad Alali , Mahdi Imani

Analogous to genomic sequence alignment, biological network alignment (NA) aims to find regions of similarities between molecular networks (rather than sequences) of different species. NA can be either local (LNA) or global (GNA). LNA aims…

分子网络 · 定量生物学 2016-06-07 Lei Meng , Joseph Crawford , Aaron Striegel , Tijana Milenkovic

Biological network alignment (NA) aims to find a node mapping between species' molecular networks that uncovers similar network regions, thus allowing for transfer of functional knowledge between the aligned nodes. However, current NA…

分子网络 · 定量生物学 2020-09-09 Shawn Gu , Tijana Milenkovic

Stochastic gradient descent with backpropagation is the workhorse of artificial neural networks. It has long been recognized that backpropagation fails to be a biologically plausible algorithm. Fundamentally, it is a non-local procedure --…

机器学习 · 统计学 2021-12-24 Ganlin Song , Ruitu Xu , John Lafferty

We consider a distributed estimation method in a setting with heterogeneous streams of correlated data distributed across nodes in a network. In the considered approach, linear models are estimated locally (i.e., with only local data)…

机器学习 · 计算机科学 2021-02-11 Lingzhou Hong , Alfredo Garcia , Ceyhun Eksin