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Complex systems can be characterized by classes of equivalency of their elements defined according to system specific rules. We propose a generalized preferential attachment model to describe the class size distribution. The model…

We suggest a natural approach that leads to a modification of classical quasispecies models and incorporates the possibility of population extinction in addition to growth. The resulting modified models are called open. Their essential…

种群与进化 · 定量生物学 2019-03-25 Ivan Yegorov , Artem S. Novozhilov , Alexander S. Bratus

We show that evolutionary computation can be implemented as standard Markov-chain Monte-Carlo (MCMC) sampling. With some care, `genetic algorithms' can be constructed that are reversible Markov chains that satisfy detailed balance; it…

种群与进化 · 定量生物学 2014-02-13 Chris Watkins , Yvonne Buttkewitz

A general population evolution model is considered. Any individual of the population is characterized by its score. Certain general conditions are assumed concerning the number of the individuals and their scores. Asymptotic theorems are…

概率论 · 数学 2016-04-07 I. Fazekas , Cs. Noszály , A. Perecsényi

Kingman's model describes the evolution of a one-locus haploid population of infinite size and discrete generations under the competition of selection and mutation. A random generalisation has been made in a previous paper which assumes all…

概率论 · 数学 2020-12-01 Linglong Yuan

We introduce a new model for large scale evolution and extinction in which species are organized into food chains. The system evolves by two processes: origination/speciation and extinction. In the model, extinction of a given species can…

统计力学 · 物理学 2007-05-23 Luis A. N. Amaral , Martin Meyer

A simple model of biological extinction with variable system size is presented that exhibits a power-law distribution of extinction event sizes. The model is a generalization of a model recently introduced by Newman (Proc. R. Soc. Lond.…

生物物理 · 物理学 2016-09-08 C. Wilke , T. Martinetz

We review recent work aimed at modeling species extinction over geological time. We discuss a number of models which, rather than dealing with the direct causes of particular extinction events, attempt to predict overall statistical trends,…

adap-org · 物理学 2015-06-30 M. E. J. Newman , R. G. Palmer

Biological evolution can be conceptualized as a search process in the space of gene sequences guided by the fitness landscape, a mapping that assigns a measure of reproductive value to each genotype. Here we discuss probabilistic models of…

种群与进化 · 定量生物学 2024-04-10 Joachim Krug , Daniel Oros

We explore some aspects of the relationship between biological evolution processes and the mathematical theory of records. For Eigen's quasispecies model with an uncorrelated fitness landscape, we show that the evolutionary trajectories…

种群与进化 · 定量生物学 2009-11-10 Joachim Krug , Kavita Jain

In this paper, we discuss the fitness landscape evolution of permanent replicator systems using a hypothesis that the specific time of evolutionary adaptation of the system parameters is much slower than the time of internal evolutionary…

种群与进化 · 定量生物学 2019-11-11 Sergei Drozhzhin , Tatiana Yakushkina , Alexander Bratus

Over the past decades, researchers and ML practitioners have come up with better and better ways to build, understand and improve the quality of ML models, but mostly under the key assumption that the training data is distributed…

机器学习 · 计算机科学 2019-10-14 Yeounoh Chung , Peter J. Haas , Eli Upfal , Tim Kraska

Time evolution of number of species (genera, families, and others), population of them, and size distribution of present ones and life times are studied in terms of a new model, where population of each genetic taxon increases by a (random)…

种群与进化 · 定量生物学 2007-05-23 Caglar Tuncay

A simple model of macroevolution is proposed exhibiting both the property of punctuated equilibrium and the dynamics of potentialities for different species to evolve towards increasingly higher complexity. It is based on the phenomenon of…

生物物理 · 物理学 2007-05-23 Siegfried Fussy , Gerhard Groessing , Herbert Schwabl

We consider the evolution of an asexually reproducing population in an uncorrelated random fitness landscape in the limit of infinite genome size, which implies that each mutation generates a new fitness value drawn from a probability…

种群与进化 · 定量生物学 2009-11-13 Su-Chan Park , Joachim Krug

We investigate a continuous time, probability measure-valued dynamical system that describes the process of mutation-selection balance in a context where the population is infinite, there may be infinitely many loci, and there are weak…

种群与进化 · 定量生物学 2011-09-20 Steven N. Evans , David Steinsaltz , Kenneth W. Wachter

We will study the relationship between two well-known theories, genetic evolution and random matrix theory in the context of many-body systems. It is suggested that genetic evolution can be described by a random matrix theory with…

混沌动力学 · 物理学 2025-05-13 Mehdi Ameri

Evolution is the process of optimal adaptation of biological populations to their living environments. This is expressed via the concept of fitness, defined as relative reproductive success. However, it has been pointed out that this…

种群与进化 · 定量生物学 2025-04-17 Luís MA Bettencourt , Brandon J Grandison , Jordan T Kemp

We incorporate the generic hierarchical architecture of foodwebs into a "{\it unified}" model that describes both "micro" and "macro" evolutions within a single theoretical framework. This model describes the "micro" -evolution in detail by…

统计力学 · 物理学 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

Mathematical models play an increasingly important role in the interpretation of biological experiments. Studies often present a model that generates the observations, connecting hypothesized process to an observed pattern. Such generative…

种群与进化 · 定量生物学 2014-06-18 Steven A. Frank