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Phenotype of biological systems needs to be robust against mutation in order to sustain themselves between generations. On the other hand, phenotype of an individual also needs to be robust against fluctuations of both internal and external…

种群与进化 · 定量生物学 2015-06-26 Kunihiko Kaneko

The characterization of plasticity, robustness, and evolvability, an important issue in biology, is studied in terms of phenotypic fluctuations. By numerically evolving gene regulatory networks, the proportionality between the phenotypic…

种群与进化 · 定量生物学 2015-06-15 Kunihiko Kaneko

Developmental trajectories are known to be canalized, or robust to both environmental and genetic perturbations. However, even when these trajectories are decanalized by an environmental perturbation outside of the range of conditions to…

生物物理 · 物理学 2025-09-25 Yuuki Matsushita , Archishman Raju

Biological functions are generated as a result of developmental dynamics that form phenotypes governed by genotypes. The dynamical system for development is shaped through genetic evolution following natural selection based on the fitness…

种群与进化 · 定量生物学 2009-11-13 Kunihiko Kaneko

The observation that phenotypic variability is ubiquitous in isogenic populations has led to a multitude of experimental and theoretical studies seeking to probe the causes and consequences of this variability. Whether it be in the context…

种群与进化 · 定量生物学 2022-02-18 Ethan Levien , Jiseon Min , Jane Kondev , Ariel Amir

Robustness to genetic or environmental disturbances is often considered as a key property of living systems. Yet, in spite of being discussed since the 1950s, how robustness emerges from the complexity of genetic architectures and how it…

种群与进化 · 定量生物学 2022-03-31 Arnaud Le Rouzic

Conventional population genetics considers the evolution of a limited number of genotypes corresponding to phenotypes with different fitness. As model phenotypes, in particular RNA secondary structure, have become computationally tractable,…

种群与进化 · 定量生物学 2008-04-22 Gergely J. Szollosi , Imre Derenyi

Stochastic phenotype switching has been suggested to play a beneficial role in microbial populations by leading to the division of labour among cells, or ensuring that at least some of the population survives an unexpected change in…

种群与进化 · 定量生物学 2016-02-02 Andrew C. Tadrowski , Martin R. Evans , Bartlomiej Waclaw

Evolution is simultaneously driven by a number of processes such as mutation, competition and random sampling. Understanding which of these processes is dominating the collective evolutionary dynamics in dependence on system properties is a…

种群与进化 · 定量生物学 2012-09-13 Hinrich Arnoldt , Marc Timme , Stefan Grosskinsky

Biological systems must be robust for stable function against perturbations, but robustness alone is not sufficient. The ability to switch between appropriate states (phenotypes) in response to different conditions is essential for…

种群与进化 · 定量生物学 2023-04-25 Ayaka Sakata , Kunihiko Kaneko

The mutation-selection mechanism of Darwinian evolution gives rise not only to adaptation to environmental conditions but also to the enhancement of robustness against mutations. When two or more phenotypes have the same fitness value, the…

种群与进化 · 定量生物学 2024-11-20 Macoto Kikuchi

Robustness to mutations and noise has been shown to evolve through stabilizing selection for optimal phenotypes in model gene regulatory networks. The ability to evolve robust mutants is known to depend on the network architecture. How do…

分子网络 · 定量生物学 2008-07-07 Volkan Sevim , Per Arne Rikvold

Molecular phenotypes are important links between genomic information and organismic functions, fitness, and evolution. Complex phenotypes, which are also called quantitative traits, often depend on multiple genomic loci. Their evolution…

种群与进化 · 定量生物学 2015-06-12 Armita Nourmohammad , Stephan Schiffels , Michael Laessig

Large sets of genotypes give rise to the same phenotype because phenotypic expression is highly redundant. Accordingly, a population can accept mutations without altering its phenotype, as long as thegenotype mutates into another one on the…

种群与进化 · 定量生物学 2015-02-18 Susanna Manrubia , José A. Cuesta

Biological functions are typically performed by groups of cells that express predominantly the same genes, yet display a continuum of phenotypes. While it is known how one genotype can generate such non-genetic diversity, it remains unclear…

Living species, ranging from bacteria to animals, exist in environmental conditions that exhibit spatial and temporal heterogeneity which requires them to adapt. Risk-spreading through spontaneous phenotypic variations is a known concept in…

A macroscopic theory for describing cellular states during steady-growth is presented, which is based on the consistency between cellular growth and molecular replication, as well as the robustness of phenotypes against perturbations.…

种群与进化 · 定量生物学 2021-02-08 Kunihiko Kaneko , Chikara Furusawa

We study a genetic regulatory network model developed to demonstrate that genetic robustness can evolve through stabilizing selection for optimal phenotypes. We report preliminary results on whether such selection could result in a…

分子网络 · 定量生物学 2010-12-07 Volkan Sevim , Per Arne Rikvold

Plasticity-led evolution is a form of evolution where a change in the environment induces novel traits via phenotypic plasticity, after which the novel traits are genetically accommodated over generations under the novel environment. This…

种群与进化 · 定量生物学 2023-01-18 Eden Tian Hwa Ng , Akira R. Kinjo

Mutational neighbourhoods in genotype-phenotype (GP) maps are widely believed to be more likely to share characteristics than expected from random chance. Such genetic correlations should, as John Maynard Smith famously pointed out,…

种群与进化 · 定量生物学 2016-03-08 Sam F. Greenbury , Steffen Schaper , Sebastian E. Ahnert , Ard A. Louis
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