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By means of contact-density chain-growth simulations, we investigate a simple lattice model of a flexible polymer interacting with an attractive substrate. The contact density is a function of the numbers of monomer-substrate and…

统计力学 · 物理学 2011-07-04 Michael Bachmann

The folding vs. adsorption behaviour of a coarse-grained off-lattice protein model near an attractive surface is presented within the frame of a Multicanonical Monte Carlo simulations. In the polymer-surface model, the Lennard-Jones…

软凝聚态物质 · 物理学 2015-12-23 Handan Arkin , Hakan Alaboz

The basic idea of fast Monte Carlo (MC) simulations is to perform particle-based MC simulations with the excluded-volume interactions modeled by "soft" repulsive potentials that allow particle overlapping. This gives much faster system…

软凝聚态物质 · 物理学 2012-01-24 Qiang Wang

We introduce a framework for adsorption of a single polymer in which the topology of the polymer is quenched before adsorption, in contrast to more standard adsorption models having annealed topology. Our "topology" refers either to the…

数学物理 · 物理学 2022-11-09 Neal Madras

We demonstrate the use of a new algorithm called the Flat Histogram sampling algorithm for the simulation of lattice polymer systems. Thermodynamics properties, such as average energy or entropy and other physical quantities such as…

统计力学 · 物理学 2009-11-07 Lik Wee Lee , Jian-Sheng Wang

We consider the adsorption of a random heteropolymer onto an interface within the model by Garel et al. [1] by taking into account self-interactions between the monomers. Within the replica trick and by using a self-consistent preaveraging…

软凝聚态物质 · 物理学 2009-11-07 Valerii A. Brazhnyi , Semjon Stepanow

We report a numerical study of self-avoiding polymers on the square lattice, including an attractive potential between nonconsecutive monomers. Using Wang-Landau sampling (WLS) with adaptive windows, we obtain the density of states for…

统计力学 · 物理学 2009-11-13 A. G. Cunha-Netto , Ronald Dickman , A. A. Caparica

Adsorption of trimers and hexamers built of identical spheres was studied numerically using the Random Sequential Adsorption (RSA) algorithm. Particles were adsorbed on a two dimensional, flat and homogeneous surface. Numerical simulations…

材料科学 · 物理学 2013-09-27 Michał Cieśla , Jakub Barbasz

The conformational behavior of a coarse-grained finite polymer chain near an attractive spherical surface was investigated by means of multicanonical Monte Carlo computer simulations. In a detailed analysis of canonical equilibrium data…

软凝聚态物质 · 物理学 2018-01-03 Handan Arkin , Wolfhard Janke

We present here the systematic development of quantitative lattice simulations of dense polymers through a novel computational technique that allows for an efficient accounting of the chain conformations. Our approach is based on the…

软凝聚态物质 · 物理学 2008-05-06 Jaydeep A. Kulkarni , Joydeep Mukherjee , Ryan C. Snyder , Timothy W. King , Antony N. Beris

A lattice gas model of adsorption inside cylindrical pores is evaluated with Monte Carlo simulations. The model incorporates two kinds of site: (a line of) ``axial'' sites and surrounding ``cylindrical shell'' sites, in ratio 1:7. The…

统计力学 · 物理学 2009-11-10 Raluca A. Trasca , M. Mercedes Calbi , Milton W. Cole , Jose L. Riccardo

We discuss two important techniques, series expansion and Monte Carlo simulation, for random sequential adsorption study. Random sequential adsorption is an idealization for surface deposition where the time scale of particle relaxation is…

统计力学 · 物理学 2009-10-31 Jian-Sheng Wang

The random sequential adsorption (RSA) model has served as a paradigm for diverse phenomena in physical chemistry, as well as in other areas such as biology, ecology, and sociology. In the present work, we survey aspects of the RSA model…

统计力学 · 物理学 2010-09-22 A. Cadilhe , N. A. M. Araujo , Vladimir Privman

A polymer chain tethered to a surface may be compact or extended, adsorbed or desorbed, depending on interactions with the surface and the surrounding solvent. This leads to a rich phase diagram with a variety of transitions. To investigate…

软凝聚态物质 · 物理学 2009-11-13 Jutta Luettmer-Strathmann , Federica Rampf , Wolfgang Paul , Kurt Binder

A method is formulated, based on combining self-consistent field theory with dynamically corrected transition state theory, for estimating the rates of adsorption and desorption of end-constrained chains (e.g. by crosslinks or…

软凝聚态物质 · 物理学 2015-02-23 Doros N. Theodorou , Georgios G. Vogiatzis , Georgios Kritikos

We consider adsorption of random copolymer chains onto an interface within the model of Garel et al. Europhysics Letters 8, 9 (1989). By using the replica method the adsorption of the copolymer at the interface is mapped onto the problem of…

软凝聚态物质 · 物理学 2009-10-31 Semjon Stepanow , Jens-Uwe Sommer , Igor Ya. Erukhimovich

Lattice model of directed self avoiding walk has been solved analytically to investigate adsorption desorption phase transition behaviour of a semiflexible sequential copolymer chain on a two dimensional impenetrable surface perpendicular…

统计力学 · 物理学 2010-02-23 Pramod Kumar Mishra

A variational approach, based on a discrete representation of the chain, is used to calculate free energy and conformational properties in polyelectrolytes. The true bond and Coulomb potentials are approximated by a trial isotropic harmonic…

chem-ph · 物理学 2016-08-15 B. Jönsson , C. Peterson , B. Söderberg

Lattice models are valuable tools to gain insight into the statistical physics of heteropolymers. We rigorously map the partition function of these models into a vacuum expectation value of a $\mathbb{Z}_2$ lattice gauge theory (LGT), with…

统计力学 · 物理学 2025-03-19 Veronica Panizza , Alessandro Roggero , Philipp Hauke , Pietro Faccioli

A model for the adsorption of a binary mixture on a one-dimensional infinite lattice with nearest neighbour cooperative effects is considered. The particles of the two species are both monomers but differ in the repulsive interaction…

统计力学 · 物理学 2010-04-20 A. Prados , J. J. Brey