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The anchoring of the molecule to an electrode is known to be a key factor in single-molecule spintronics experiments. Likewise, a relaxation down to the most stable geometry is a critical step in theoretical simulations of transport through…

介观与纳米尺度物理 · 物理学 2019-06-18 Silvia Giménez-Santamarina , Salvador Cardona-Serra , Alejandro Gaita-Ariño

Biological cells can exchange messages through soluble molecules or membrane-bound receptors. In particular in the latter case, the interaction is usually located in specific regions of the interacting cells and may depend on or induce…

定量方法 · 定量生物学 2023-12-12 Thorsten Prüstel , Martin Meier-Schellersheim

We develop a stochastic kinetic model of a pre-formed attachment of a mictrotuble (MT) with a cell cortex, in which the MT is tethered to the cell by a group of active motor proteins. Such an attachment is a particularly unique case of…

亚细胞过程 · 定量生物学 2018-10-31 Dipanwita Ghanti , Raymond W. Friddle , Debashish Chowdhury

Cell cell and cell matrix adhesions are fundamental in all multicellular organisms. They play a key role in cellular growth, differentiation, pattern formation and migration. Cell-cell adhesion is substantial in the immune response,…

The hydrodynamic theory of heterogeneous fluid membranes is extended to the case of a membrane adjacent to a solid substrate. We derive the coupling diffusion coefficients of pairs of membrane inclusions in the limit of large separation…

软凝聚态物质 · 物理学 2010-11-10 Naomi Oppenheimer , Haim Diamant

Macromolecules can form regular structures on inert surfaces. We have developed a combined empirical and modeling approach to derive the bonding. From experimental scanning tunneling microscopy (STM) images of structures formed on Au(111)…

The dynamics of a membrane coupled to an active fluid on top of a substrate is considered theoretically. It is assumed that the director field of the active fluid has rotational symmetry in the membrane plane. This situation is likely to be…

软凝聚态物质 · 物理学 2020-04-08 Chia-Chun Liang , Kento Yasuda , Shigeyuki Komura , Kuo-An Wu , Hsuan-Yi Chen

Understanding mechanosensitivity, i.e. how cells sense the stiffness of their environment is very important, yet there is a fundamental difficulty in understanding its mechanism: to measure an elastic modulus one requires two points of…

细胞行为 · 定量生物学 2015-06-17 Matteo Escude , Michelle K. Rigozzi , Eugene M. Terentjev

Cells sense the geometry and stiffness of their adhesive environment by active contractility. For strong adhesion to flat substrates, two-dimensional contractile network models can be used to understand how force is distributed throughout…

细胞行为 · 定量生物学 2015-06-03 P. Guthardt Torres , I. B. Bischofs , U. S. Schwarz

We consider the lateral diffusion of a protein interacting with the curvature of the membrane. The interaction energy is minimized if the particle is at a membrane position with a certain curvature that agrees with the spontaneous curvature…

软凝聚态物质 · 物理学 2008-12-10 Stefan M. Leitenberger , Ellen Reister-Gottfried , Udo Seifert

Cell membranes are anchored to the cytoskeleton via immobile inclusions. We investigate the effect of such anchors on the in-plane dynamics of a fluid membrane and mobile inclusions (proteins) embedded in it. The immobile particles lead to…

软凝聚态物质 · 物理学 2012-02-02 Naomi Oppenheimer , Haim Diamant

Cell-cell adhesion is one the most fundamental mechanisms regulating collective cell migration during tissue development, homeostasis and repair, allowing cell populations to self-organize and eventually form and maintain complex tissue…

细胞行为 · 定量生物学 2022-11-16 Carles Falcó , Ruth E. Baker , José A. Carrillo

We present a multi-scale model to study the attachment of spherical particles with a rigid core, coated with binding ligands and in equilibrium with the surrounding, quiescent fluid medium. This class of fluid-immersed adhesion is…

生物物理 · 物理学 2013-09-10 Sarthok Sircar , John G. Younger , David M. Bortz

The accurate screening of candidate drug ligands against target proteins through computational approaches is of prime interest to drug development efforts. Such virtual screening depends in part on methods to predict the binding affinity…

机器学习 · 计算机科学 2024-10-22 Ho-Joon Lee , Prashant S. Emani , Mark B. Gerstein

Using analytical calculations and computer simulations we consider both the lateral diffusion of a membrane protein and the fluctuation spectrum of the membrane in which the protein is embedded. The membrane protein interacts with the…

软凝聚态物质 · 物理学 2015-05-18 Ellen Reister-Gottfried , Stefan M. Leitenberger , Udo Seifert

Protein-ligand binding is the process by which a small molecule (drug or inhibitor) attaches to a target protein. Binding affinity, which characterizes the strength of biomolecular interactions, is essential for tackling diverse challenges…

Bimolecular binding rate constants are often used to describe the association of large molecules, such as proteins. In this paper, we analyze a model for such binding rates that includes the fact that pairs of molecules can bind only in…

偏微分方程分析 · 数学 2020-11-05 Claire E. Plunkett , Sean D. Lawley

The bending rigidity $k_c$ of bilayer vesicles self-assembled from amphiphilic diblock copolymers has been measured using single and dual-micropipet techniques. These copolymers are nearly a factor of 5 greater in hydrophobic membrane…

软凝聚态物质 · 物理学 2007-05-23 H. Bermudez , D. A. Hammer , D. E. Discher

The activity of cell membrane inclusions (such as ion channels) is influenced by the host lipid membrane, to which they are elastically coupled. This coupling concerns the hydrophobic thickness of the bilayer (imposed by the length of the…

软凝聚态物质 · 物理学 2018-06-24 Florent Bories , Doru Constantin , Paolo Galatola , Jean-Baptiste Fournier

Cell membranes are studded with protrusions that were thoroughly analyzed with electron microscopy. However, the nanometer-scale three-dimensional motions generated by cell membranes to fit the topography of foreign surfaces and initiate…

生物物理 · 物理学 2008-09-04 Anne Pierres , Anne-Marie Benoliel , Dominique Touchard , Pierre Bongrand