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We present a Brownian inchworm model of a self-propelled elastic dimer in the absence of an external potential. Nonequilibrium noise together with a stretch-dependent damping form the propulsion mechanism. Our model connects three key…

统计力学 · 物理学 2011-11-10 K. Vijay Kumar , Sriram Ramaswamy , Madan Rao

Individual movements of a rod-like self-propelled particle on a flat substrate are quantified. Biological systems that fit into this description may be the Gram-negative delta-proteobacterium Myxococcus xanthus, Gram-negative bacterium…

生物物理 · 物理学 2012-05-03 Gulmammad Mammadov

We construct and exactly solve a model of an extended Brownian ratchet. The model comprises an arbitrary number of heterogeneous, growing and shrinking filaments which together move a rigid membrane by a ratchet mechanism. The model draws…

统计力学 · 物理学 2019-10-23 Anthony J. Wood , Richard A. Blythe , Martin R. Evans

The Dyson Brownian Motion (DBM) describes the stochastic evolution of $N$ points on the line driven by an applied potential, a Coulombic repulsion and identical, independent Brownian forcing at each point. We use an explicit tamed Euler…

数值分析 · 数学 2015-06-16 Xingjie Helen Li , Govind Menon

We consider an elastic rod model for twisted DNA in the plectonemic regime. The molecule is treated as an impenetrable tube with an effective, adjustable radius. The model is solved analytically and we derive formulas for the contact…

生物大分子 · 定量生物学 2009-11-13 N. Clauvelin , B. Audoly , S. Neukirch

An elastic rod model for semi-flexible polymers is presented. Theory for a continuum rod is reviewed, and it is shown that a popular discretised model used in numerical simulations gives the correct continuum limit. Correlation functions…

生物物理 · 物理学 2014-04-08 C. A. Brackley , A. N. Morozov , D. Marenduzzo

We present the first numerical simulation of actin-driven propulsion by elastic filaments. Specifically, we use a Brownian dynamics formulation of the dendritic nucleation model of actin-driven propulsion. We show that the model leads to a…

细胞行为 · 定量生物学 2009-11-13 Kun-Chun Lee , Andrea J. Liu

The results of Brownian dynamics simulations of a single DNA molecule in shear flow are presented taking into account the effect of internal viscosity. The dissipative mechanism of internal viscosity is proved necessary in the research of…

生物大分子 · 定量生物学 2010-04-14 Jack Yang , Roderick V. N. Melnik

We consider the self-repelling Brownian polymer, introduced in [APP83], which is formally defined as the solution of a singular SDE. The singularity comes from the drift term, which is given by the negative gradient of the local time. We…

概率论 · 数学 2025-09-08 Harry Giles , Lukas Gräfner

In this note, we consider a Robin-type traction problem for a linearly elastic body occupying an infinite periodically perforated domain. After proving the uniqueness of the solution we use periodic elastic layer potentials to show that the…

偏微分方程分析 · 数学 2022-08-05 Matteo Dalla Riva , Gennady Mishuris , Paolo Musolino

We propose in this paper to derive and analyze a self-consistent model describing the diffusive transport in a nanowire. From a physical point of view, it describes the electron transport in an ultra-scaled confined structure, taking in…

偏微分方程分析 · 数学 2011-05-19 Jourdana Clément , Nicolas Vauchelet

We study experimentally, numerically and analytically, the dynamics of a chiral active particle (cm-sized robots), pulled at a constant translational velocity. We show that the system can be mapped to a Brownian particle driven across a…

统计力学 · 物理学 2025-06-26 Juan Pablo Carrillo-Mora , Adrià Garcés , Demian Levis

An inchworm processive mechanism is proposed to explain the motion of dimeric molecular motors such as kinesin. We present here preliminary results for this mechanism focusing on observables like mean velocity, coupling ratio and efficiency…

生物大分子 · 定量生物学 2009-11-13 A. Ciudad , J. M. Sancho , A. M. Lacasta

We consider one-dimensional diffusions, with polynomial drift and diffusion coefficients, so that in particular the motion can be space-inhomogeneous, interacting via one-sided reflections. The prototypical example is the well-known model…

概率论 · 数学 2023-07-05 Theodoros Assiotis

Worm-like filaments that are propelled homogeneously along their tangent vector are studied by Brownian dynamics simulations. Systems in two dimensions are investigated, corresponding to filaments adsorbed to interfaces or surfaces. A large…

软凝聚态物质 · 物理学 2016-08-23 Rolf E. Isele-Holder , Jens Elgeti , Gerhard Gompper

Slender bodies capable of spontaneous motion in the absence of external actuation in an otherwise quiescent fluid are common in biological, physical and technological contexts. The interplay between the spontaneous fluid flow, Brownian…

软凝聚态物质 · 物理学 2015-08-13 Abhrajit Laskar , R. Adhikari

We provide a new, concise proof of weak existence and uniqueness of solutions to the stochastic differential equation for the multidimensional skew Brownian motion. We also present an application to Brownian particles with skew-elastic…

概率论 · 数学 2014-02-25 Rami Atar , Amarjit Budhiraja

We study the 2D motion of colloidal dimers by single-particle tracking and compare the experimental observations obtained by bright-field microscopy to theoretical predictions for anisotropic diffusion. The comparison is based on the…

In this paper, we study the unitary Dyson Brownian motion through a partial differential equation approach recently introduced for the real Dyson case. The main difference with the real Dyson case is that the spectrum is now on the circle…

偏微分方程分析 · 数学 2026-02-09 Charles Bertucci , Valentin Pesce

We derive a mobility tensor for many cylindrical objects embedded in a viscous sheet. This tensor guarantees a positive dissipation rate for any configuration of particles and forces, analogously to the Rotne-Prager-Yamakawa tensor for…

软凝聚态物质 · 物理学 2018-08-15 Yulia Sokolov , Haim Diamant
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