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Understanding information processing in the brain requires the ability to determine the functional connectivity between the different regions of the brain. We present a method using transfer entropy to extract this flow of information…

神经元与认知 · 定量生物学 2019-03-06 Benjamin Walker , Katherine Newhall

Background: Spike trains of multiple neurons can be analyzed following the summed population (SP) or the labeled line (LL) hypothesis. Responses to external stimuli are generated by a neuronal population as a whole or the individual neurons…

神经元与认知 · 定量生物学 2018-09-17 Eero Satuvuori , Mario Mulansky , Andreas Daffertshofer , Thomas Kreuz

Consider observing a collection of discrete events within a network that reflect how network nodes influence one another. Such data are common in spike trains recorded from biological neural networks, interactions within a social network,…

机器学习 · 统计学 2018-02-15 Benjamin Mark , Garvesh Raskutti , Rebecca Willett

Understanding how network function constrains neural connectivity is a central challenge in neuroscience. An influential approach is to train neural networks with gradient descent on cognitive tasks and characterize the resulting…

神经元与认知 · 定量生物学 2026-05-26 Ludwig Hruza , Srdjan Ostojic

Predictability of behavior has emerged an an important characteristic in many fields including biology, medicine, and marketing. Behavior can be recorded as a sequence of actions performed by an individual over a given time period. This…

统计方法学 · 统计学 2017-11-13 Brian Vegetabile , Jenny Molet , Tallie Z. Baram , Hal Stern

In our previous studies we have investigated the structural complexity of time series describing stock returns on New York's and Warsaw's stock exchanges, by employing two estimators of Shannon's entropy rate based on Lempel-Ziv and Context…

统计金融 · 定量金融 2014-08-19 Paweł Fiedor

Animal brains exhibit remarkable efficiency in perception and action, while being robust to both external and internal perturbations. The means by which brains accomplish this remains, for now, poorly understood, hindering our understanding…

神经元与认知 · 定量生物学 2026-03-11 André Urbano , Pablo Lanillos , Sander Keemink

The aim of this paper is to investigate various information-theoretic measures, including entropy, mutual information, and some systematic measures that based on mutual information, for a class of structured spiking neuronal network. In…

神经元与认知 · 定量生物学 2019-12-04 Wenjie Li , Yao Li

The nervous system represents time-dependent signals in sequences of discrete action potentials or spikes, all spikes are identical so that information is carried only in the spike arrival times. We show how to quantify this information, in…

凝聚态物理 · 物理学 2008-02-03 S. P. Strong , Roland Koberle , Rob R. de Ruyter van Steveninck , William Bialek

Advances in modern technology have enabled the simultaneous recording of neural spiking activity, which statistically can be represented by a multivariate point process. We characterise the second order structure of this process via the…

统计方法学 · 统计学 2024-04-30 Carla Pinkney , Carolina Euan , Alex Gibberd , Ali Shojaie

For energy-efficient computation in specialized neuromorphic hardware, we present spiking neural coding, an instantiation of a family of artificial neural models grounded in the theory of predictive coding. This model, the first of its…

神经与进化计算 · 计算机科学 2022-08-09 Alexander Ororbia

We address the problem of identifying functional interactions among stochastic neurons with variable-length memory from their spiking activity. The neuronal network is modeled by a stochastic system of interacting point processes with…

应用统计 · 统计学 2025-07-01 Ricardo F. Ferreira , Matheus E. Pacola , Vitor G. Schiavone , Rodrigo F. O. Pena

Maximum entropy models are the least structured probability distributions that exactly reproduce a chosen set of statistics measured in an interacting network. Here we use this principle to construct probabilistic models which describe the…

神经元与认知 · 定量生物学 2014-01-28 Gašper Tkačik , Olivier Marre , Dario Amodei , Elad Schneidman , William Bialek , Michael J Berry

Sensory stimuli in animals are encoded into spike trains by neurons, offering advantages such as sparsity, energy efficiency, and high temporal resolution. This paper presents a signal processing framework that deterministically encodes…

神经与进化计算 · 计算机科学 2024-08-15 Anik Chattopadhyay , Arunava Banerjee

We study the stochastic dynamics of strongly-coupled excitable elements on a tree network. The peripheral nodes receive independent random inputs which may induce large spiking events propagating through the branches of the tree and leading…

生物物理 · 物理学 2017-07-14 Justus Kromer , Ali Khaledi-Nasab , Lutz Schimansky-Geier , Alexander B. Neiman

Maximum Entropy models can be inferred from large data-sets to uncover how collective dynamics emerge from local interactions. Here, such models are employed to investigate neurons recorded by multielectrode arrays in the human and monkey…

神经元与认知 · 定量生物学 2018-07-11 Trang-Anh Nghiem , Bartosz Telenczuk , Olivier Marre , Alain Destexhe , Ulisse Ferrari

The standard approach to fitting an autoregressive spike train model is to maximize the likelihood for one-step prediction. This maximum likelihood estimation (MLE) often leads to models that perform poorly when generating samples…

机器学习 · 统计学 2020-10-26 Diego M. Arribas , Yuan Zhao , Il Memming Park

The brain is a highly complex system. Most of such complexity stems from the intermingled connections between its parts, which give rise to rich dynamics and to the emergence of high-level cognitive functions. Disentangling the underlying…

神经元与认知 · 定量生物学 2023-08-14 Vito Dichio , Fabrizio De Vico Fallani

We consider a spike-generating stationary Markov process whose transition probabilities are known. We show that there is a canonical potential whose Gibbs distribution, obtained from the Maximum Entropy Principle (MaxEnt), is the…

神经元与认知 · 定量生物学 2014-01-07 Rodrigo Cofre , Bruno Cessac

One of the paramount challenges in neuroscience is to understand the dynamics of individual neurons and how they give rise to network dynamics when interconnected. Historically, researchers have resorted to graph theory, statistics, and…

神经元与认知 · 定量生物学 2019-02-08 Jean-Baptiste Bardin , Gard Spreemann , Kathryn Hess