相关论文: Kauffman Boolean model in undirected scale free ne…
In clean and weakly disordered systems, topological and trivial phases having a finite bulk energy gap can transit to each other via a quantum critical point. In presence of strong disorder, both the nature of the phases and the associated…
Boolean Networks have been used to study numerous phenomena, including gene regulation, neural networks, social interactions, and biological evolution. Here, we propose a general method for determining the critical behavior of Boolean…
We study fully synchronized states in scale-free networks of chaotic logistic maps as a function of both dynamical and topological parameters. Three different network topologies are considered: (i) random scale-free topology, (ii)…
Standard Random Boolean Networks display an order-disorder phase transition. We add to the standard Random Boolean Networks a disconnection rule which couples the control and order parameters. By this way, the system is driven to the…
Complex networks have been mostly characterized from the point of view of the degree distribution of their nodes and a few other motifs (or modules), with a special attention to triangles and cliques. The most exotic phenomena have been…
We show that there are two classes of finite size effects for dynamic models taking place on a scale-free topology. Some models in finite networks show a behavior that depends only on the system size N. Others present an additional distinct…
Percolation in a scale-free hierarchical network is solved exactly by renormalization-group theory, in terms of the different probabilities of short-range and long-range bonds. A phase of critical percolation, with algebraic…
We study the critical behavior for percolation on inhomogeneous random networks on $n$ vertices, where the weights of the vertices follow a power-law distribution with exponent $\tau \in (2,3)$. Such networks, often referred to as…
We study the nature of fitness landscapes of 'quenched' Kauffman's Boolean model with a scale-free network. We have numerically calculated the rugged fitness landscapes, the distributions, its tails, and the correlation between the fitness…
We investigate Threshold Random Boolean Networks with $K = 2$ inputs per node, which are equivalent to Kauffman networks, with only part of the canalyzing functions as update functions. According to the simplest consideration these networks…
Methods connecting dynamical systems and graph theory have attracted increasing interest in the past few years, with applications ranging from a detailed comparison of different kinds of dynamics to the characterisation of empirical data.…
A model of cellular metabolism due to S. Kauffman is analyzed. It consists of a network of Boolean gates randomly assembled according to a probability distribution. It is shown that the behavior of the network depends very critically on…
We discuss the complex dynamics of a non-linear random networks model, as a function of the connectivity k between the elements of the network. We show that this class of networks exhibit an order-chaos phase transition for a critical…
In this paper, we study a model of long-range site percolation on graphs of bounded degree, namely the Boolean percolation model. In this model, each vertex of an infinite connected graph is the center of a ball of random radius, and…
We study the size and the lifetime distributions of scale-free random branching tree in which $k$ branches are generated from a node at each time step with probability $q_k\sim k^{-\gamma}$. In particular, we focus on finite-size trees in a…
Temporal gene expression data (Wen, et. al.) was analyzed using the recently introduced inverse modeling technique of Embedded Complex Logistic Maps (ECLM). Preliminary results indicate scale-free structure in the gene regulatory network…
A variant of Kauffman's model of cellular metabolism is presented. It is a randomly generated network of boolean gates, identical to Kauffman's except for a small bias in favor of boolean gates that depend on at most one input. The bias is…
The exponential family of random graphs is one of the most promising class of network models. Dependence between the random edges is defined through certain finite subgraphs, analogous to the use of potential energy to provide dependence…
We investigate topologically biased failure in scale-free networks with degree distribution $P(k) \propto k^{-\gamma}$. The probability $p$ that an edge remains intact is assumed to depend on the degree $k$ of adjacent nodes $i$ and $j$…
In this paper we study the phase transitions of different types of Random Boolean networks. These differ in their updating scheme: synchronous, semi-synchronous, or asynchronous, and deterministic or non-deterministic. It has been shown…