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We propose a method for representing malignant lymphoma pathology images, from high-resolution cell nuclei to low-resolution tissue images, within a single hyperbolic space using self-supervised learning. To capture morphological changes…

计算机视觉与模式识别 · 计算机科学 2025-06-24 Kei Taguchi , Kazumasa Ohara , Tatsuya Yokota , Hiroaki Miyoshi , Noriaki Hashimoto , Ichiro Takeuchi , Hidekata Hontani

Lung cancer is a condition where there is abnormal growth of malignant cells that spread in an uncontrollable fashion in the lungs. Some common treatment strategies are surgery, chemotherapy, and radiation which aren't the best options due…

计算机视觉与模式识别 · 计算机科学 2026-03-18 Ann Rachel , Pranav M Pawar , Mithun Mukharjee , Raja M , Tojo Mathew

Collective cell responses to exogenous cues depend on cell-cell interactions. In principle, these can result in enhanced sensitivity to weak and noisy stimuli. However, this has not yet been shown experimentally, and, little is known about…

Cell shape is linked to cell function. The significance of cell morphodynamics, namely the temporal fluctuation of cell shape, is much less understood. Here we study the morphodynamics of MDA-MB-231 cells in type I collagen extracellular…

细胞行为 · 定量生物学 2021-10-12 Christopher Z. Eddy , Helena Raposo , Ryan Wong , Bo Sun

Accurate modelling of redshift-space distortions (RSD) is essential for maximizing the cosmological information extracted from large galaxy redshift surveys. In preparation for the forthcoming analysis of the Euclid spectroscopic data, we…

宇宙学与河外天体物理 · 物理学 2026-03-10 Euclid Collaboration , B. Camacho Quevedo , M. Crocce , M. Pellejero Ibañez , R. E. Angulo , A. Pezzotta , A. Eggemeier , G. Gambardella , C. Moretti , E. Sefusatti , A. Moradinezhad Dizgah , E. Gaztanaga , M. Zennaro , M. -A. Breton , A. Chudaykin , G. D'Amico , V. Desjacques , S. de la Torre , P. Fosalba , M. Guidi , M. Kärcher , K. Pardede , C. Porciani , A. Pugno , J. Salvalaggio , E. Sarpa , A. Veropalumbo , B. Altieri , S. Andreon , N. Auricchio , C. Baccigalupi , M. Baldi , S. Bardelli , R. Bender , A. Biviano , E. Branchini , M. Brescia , S. Camera , V. Capobianco , C. Carbone , V. F. Cardone , J. Carretero , S. Casas , F. J. Castander , M. Castellano , G. Castignani , S. Cavuoti , K. C. Chambers , A. Cimatti , C. Colodro-Conde , G. Congedo , L. Conversi , Y. Copin , F. Courbin , H. M. Courtois , H. Degaudenzi , G. De Lucia , H. Dole , M. Douspis , F. Dubath , C. A. J. Duncan , X. Dupac , S. Dusini , S. Escoffier , M. Farina , R. Farinelli , S. Farrens , S. Ferriol , F. Finelli , S. Fotopoulou , N. Fourmanoit , M. Frailis , E. Franceschi , M. Fumana , S. Galeotta , K. George , B. Gillis , C. Giocoli , J. Gracia-Carpio , A. Grazian , F. Grupp , L. Guzzo , S. V. H. Haugan , W. Holmes , F. Hormuth , A. Hornstrup , K. Jahnke , B. Joachimi , S. Kermiche , A. Kiessling , B. Kubik , M. Kümmel , M. Kunz , H. Kurki-Suonio , A. M. C. Le Brun , S. Ligori , P. B. Lilje , V. Lindholm , I. Lloro , G. Mainetti , E. Maiorano , O. Mansutti , S. Marcin , O. Marggraf , M. Martinelli , N. Martinet , F. Marulli , R. J. Massey , E. Medinaceli , M. Melchior , M. Meneghetti , E. Merlin , G. Meylan , A. Mora , M. Moresco , L. Moscardini , C. Neissner , S. -M. Niemi , C. Padilla , S. Paltani , F. Pasian , K. Pedersen , W. J. Percival , V. Pettorino , S. Pires , G. Polenta , M. Poncet , L. A. Popa , F. Raison , J. Rhodes , G. Riccio , F. Rizzo , E. Romelli , M. Roncarelli , R. Saglia , Z. Sakr , A. G. Sánchez , D. Sapone , B. Sartoris , P. Schneider , A. Secroun , G. Seidel , E. Sihvola , P. Simon , C. Sirignano , G. Sirri , A. Spurio Mancini , L. Stanco , P. Tallada-Crespí , D. Tavagnacco , A. N. Taylor , I. Tereno , N. Tessore , S. Toft , R. Toledo-Moreo , F. Torradeflot , I. Tutusaus , J. Valiviita , T. Vassallo , Y. Wang , J. Weller , G. Zamorani , F. M. Zerbi , E. Zucca , V. Allevato , M. Ballardini , A. Boucaud , E. Bozzo , C. Burigana , R. Cabanac , M. Calabrese , A. Cappi , T. Castro , J. A. Escartin Vigo , L. Gabarra , J. Macias-Perez , R. Maoli , J. Martín-Fleitas , N. Mauri , R. B. Metcalf , P. Monaco , A. A. Nucita , M. Pöntinen , I. Risso , V. Scottez , M. Sereno , M. Tenti , M. Tucci , M. Viel , M. Wiesmann , Y. Akrami , I. T. Andika , G. Angora , M. Archidiacono , F. Atrio-Barandela , L. Bazzanini , J. Bel , D. Bertacca , M. Bethermin , A. Blanchard , L. Blot , H. Böhringer , S. Borgani , M. L. Brown , S. Bruton , A. Calabro , F. Caro , C. S. Carvalho , F. Cogato , A. R. Cooray , S. Davini , F. De Paolis , G. Desprez , A. Díaz-Sánchez , S. Di Domizio , J. M. Diego , V. Duret , M. Y. Elkhashab , A. Enia , Y. Fang , A. G. Ferrari , A. Finoguenov , A. Fontana , F. Fontanot , A. Franco , K. Ganga , T. Gasparetto , F. Giacomini , F. Gianotti , G. Gozaliasl , A. Gruppuso , C. M. Gutierrez , A. Hall , C. Hernández-Monteagudo , H. Hildebrandt , J. Hjorth , J. J. E. Kajava , Y. Kang , V. Kansal , D. Karagiannis , K. Kiiveri , J. Kim , C. C. Kirkpatrick , S. Kruk , L. Legrand , M. Lembo , F. Lepori , G. Leroy , G. F. Lesci , J. Lesgourgues , T. I. Liaudat , M. Magliocchetti , F. Mannucci , C. J. A. P. Martins , L. Maurin , M. Miluzio , A. Montoro , G. Morgante , S. Nadathur , K. Naidoo , A. Navarro-Alsina , S. Nesseris , L. Pagano , D. Paoletti , F. Passalacqua , K. Paterson , L. Patrizii , A. Pisani , D. Potter , G. W. Pratt , S. Quai , M. Radovich , K. Rojas , W. Roster , S. Sacquegna , M. Sahlén , D. B. Sanders , A. Schneider , D. Sciotti , E. Sellentin , L. C. Smith , K. Tanidis , C. Tao , F. Tarsitano , G. Testera , R. Teyssier , S. Tosi , A. Troja , D. Vergani , F. Vernizzi , G. Verza , P. Vielzeuf , S. Vinciguerra , N. A. Walton , A. H. Wright

Cancer stem cells have been shown to be critical to the development of a variety of solid cancers. The precise interplay mechanisms between cancer stem cells and the rest of a tissue are still not elucidated. To shed light on the…

细胞行为 · 定量生物学 2019-09-04 L. Benítez , L. Barberis , C. A. Condat

Cell shape is an important biomarker that is directly linked to cell function. However, cell morphodynamics, namely the temporal fluctuation of cell shape is much less understood. We study the morphodynamics of MDA-MB-231 cells in type I…

细胞行为 · 定量生物学 2019-04-10 Christopher Z. Eddy , Xinyao Wang , Fuxin Li , Bo Sun

Background and Objective: In an in-vivo situation, the tissue near the blood vessels is rich in oxygen supply compared to the one far from blood vessels. Hence, non-uniform oxygen distribution is observed in biological tissues. Our…

组织与器官 · 定量生物学 2023-11-08 Gopinath Sadhu , K S Yadav , Siddhartha Sankar Ghosh , D C Dalal

In the present article the diffusion equation is used to model the spatio-temporal dynamics of a tumor, taking into account the heterogeneous of the medium. This approach makes it possible to take into account the complex geometric shape of…

生物物理 · 物理学 2023-02-07 Maxim V. Polyakov , Valeria V. Ten

Tumours behave as moving targets that can evade chemotherapeutic treatments by rapidly acquiring resistance via various mechanisms. In Balaz et al. (2021, Biosystems; 199:104290) we initiated the development of the agent-based open-ended…

多智能体系统 · 计算机科学 2021-05-26 Igor Balaz , Tara Petric , Namid Stillman

To elucidate the role of environmental conditions in molecular-level dynamics and to study their impact on macroscopic brain tumor growth patterns, the expression of the genes Tenascin C and PCNA in a 2D agent-based model for the migratory…

适应与自组织系统 · 物理学 2009-11-10 Yuri Mansury , Thomas S. Deisboeck

The capability of cells to form surface extensions to non-locally probe the surrounding environment plays a key role in cell migration. The existing mathematical models for migration of cell populations driven by this non-local form of…

细胞行为 · 定量生物学 2025-12-24 Tommaso Lorenzi , Nadia Loy , Chiara Villa

The extracellular matrix (ECM) is a highly complex structure through which biochemical and mechanical signals are transmitted. In processes of cell migration, the ECM also acts as a scaffold, providing structural support to cells as well as…

Cell adhesion and migration are strongly influenced by extracellular matrix (ECM) architecture and rigidity, but little is known about the concomitant influence of such environmental signals to cell responses, especially when considering…

Tumor spheroids are in vitro three-dimensional, cellular collectives consisting of cancerous cells. Embedding these spheroids in an in vitro fibrous environment, such as a collagen network, to mimic the extracellular matrix (ECM) provides…

In the sixth-generation (6G), the extremely large-scale multiple-input-multiple-output (XL-MIMO) is considered a promising enabling technology. With the further expansion of array element number and frequency bands, near-field effects will…

信息论 · 计算机科学 2024-04-29 Haiyang Miao , Jianhua Zhang , Pan Tang , Lei Tian , Weirang Zuo , Qi Wei , Guangyi Liu

Cell migration in fibreous extracellular matrix (ECM) is crucial to many physiological and pathological processes such as tissue regeneration, immune response and cancer progression. During migration, individual cells can generate active…

细胞行为 · 定量生物学 2019-10-16 Yu Zheng , Hanqing Nan , Qihui Fan , Xiaochen Wang , Liyu Liu , Ruchuan Liu , Fangfu Ye , Bo Sun , Yang Jiao

We present and discuss a framework for computer-aided multiscale analysis, which enables models at a "fine" (microscopic/stochastic) level of description to perform modeling tasks at a "coarse" (macroscopic, systems) level. These…

Tumors are extremely heterogeneous and comprise of a number of intratumor microenvironments or sub-regions. These tumor microenvironments may interact with eac based on complex high-level relationships, which could provide important insight…

定量方法 · 定量生物学 2019-01-29 Vishwa S. Parekh , Michael A. Jacobs

Multicellular migration and pattern formation play important roles in developmental biology, cancer metastasis and wound healing. To understand the collective cell dynamics in three dimensional extracellular matrix (ECM), we have developed…

组织与器官 · 定量生物学 2016-08-25 Amani A. Alobaidi , Bo Sun
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