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We consider the problem of estimating the dynamic latent states of an intracellular multiscale stochastic reaction network from time-course measurements of fluorescent reporters. We first prove that accurate solutions to the filtering…

统计方法学 · 统计学 2020-09-09 Zhou Fang , Ankit Gupta , Mustafa Khammash

In this paper we prove a rate of convergence for the continuous time filtering solution of a multiple timescale correlated nonlinear system to a lower dimensional filtering equation in the limit of large timescale separation. Correlation is…

概率论 · 数学 2022-01-19 Ryne Beeson , N. Sri Namachchivaya , Nicolas Perkowski

Driven by the remarkable breakthroughs during the past decade, photonics neural networks have experienced a revival. Here, we provide a general overview of progress over the past decade, and sketch a roadmap of important future…

新兴技术 · 计算机科学 2021-07-20 Daniel Brunner , Laurent Larger , Miguel C. Soriano

Computational chemistry allows researchers to experiment in sillico: by running a computer simulations of a biological or chemical processes of interest. Molecular dynamics with molecular mechanics model of interactions simulates N-body…

分布式、并行与集群计算 · 计算机科学 2014-03-03 Jana Pazúriková

Modern parallel computing devices, such as the graphics processing unit (GPU), have gained significant traction in scientific and statistical computing. They are particularly well-suited to data-parallel algorithms such as the particle…

统计计算 · 统计学 2015-06-12 Lawrence M. Murray , Anthony Lee , Pierre E. Jacob

Machine learning approaches have recently been leveraged as a substitute or an aid for physical/mathematical modeling approaches to dynamical systems. To develop an efficient machine learning method dedicated to modeling and prediction of…

机器学习 · 计算机科学 2022-08-01 Gouhei Tanaka , Tadayoshi Matsumori , Hiroaki Yoshida , Kazuyuki Aihara

We present a quantum algorithm based on repeated measurement to solve initial-value problems for nonlinear ordinary differential equations (ODEs), which may be generated from partial differential equations in plasma physics. We map a…

量子物理 · 物理学 2025-04-30 Joseph Andress , Alexander Engel , Yuan Shi , Scott Parker

Spintronic nanodevices have ultrafast nonlinear dynamic and recurrence behaviors on a nanosecond scale that promises to enable spintronic reservoir computing (RC) system. Here two physical RC systems based on a single magnetic skyrmion…

新兴技术 · 计算机科学 2020-10-28 Wencong Jiang , Lina Chen , Kaiyuan Zhou , Liyuan Li , Qingwei Fu , Youwei Du , Ronghua Liu

It was recently conjectured that every component of a discrete-time rational dynamical system is a solution to an algebraic difference equation that is linear in its highest-shift term (a quasi-linear equation). We prove that the conjecture…

符号计算 · 计算机科学 2024-06-18 Bertrand Teguia Tabuguia , James Worrell

Reservoir computing is a neural network approach for processing time-dependent signals that has seen rapid development in recent years. Physical implementations of the technique using optical reservoirs have demonstrated remarkable accuracy…

机器学习 · 计算机科学 2019-01-30 Daniel Canaday , Aaron Griffith , Daniel Gauthier

This article describes a numerical procedure designed to tune the parameters of periodically-driven dynamical systems to a state in which they exhibit rich dynamical behavior. This is achieved by maximizing the diversity of subharmonic…

混沌动力学 · 物理学 2017-02-13 Leandro M. Alonso

The stationarity is assumed in vanilla Hawkes process, which reduces the model complexity but introduces a strong assumption. In this paper, we propose a fast multi-resolution segmentation algorithm to capture the time-varying…

应用统计 · 统计学 2019-06-07 Feng Zhou , Zhidong Li , Xuhui Fan , Yang Wang , Arcot Sowmya , Fang Chen

In this document, we present key findings in structured matrix approximation theory, with applications to the regressive representation of dynamic financial processes. Initially, we explore a comprehensive approach involving generic…

系统与控制 · 电气工程与系统科学 2025-10-28 Fredy Vides , Idelfonso B. R. Nogueira , Gabriela Lopez Gutierrez , Lendy Banegas , Evelyn Flores

This paper presents our work on developing parallel computational methods for two-phase flow on modern parallel computers, where techniques for linear solvers and nonlinear methods are studied and the standard and inexact Newton methods are…

计算工程、金融与科学 · 计算机科学 2017-01-24 Hui Liu , Lihua Shen , Yan Chen , Kun Wang , Bo Yang , Zhangxin Chen

We propose a simple, interpretable framework for solving a wide range of image reconstruction problems such as denoising and deconvolution. Given a corrupted input image, the model synthesizes a spatially varying linear filter which, when…

图像与视频处理 · 电气工程与系统科学 2018-11-29 Shu Kong , Charless Fowlkes

Backpropagation through nonlinear neurons is an outstanding challenge to the field of optical neural networks and the major conceptual barrier to all-optical training schemes. Each neuron is required to exhibit a directionally dependent…

新兴技术 · 计算机科学 2021-03-22 Xianxin Guo , Thomas D. Barrett , Zhiming M. Wang , A. I. Lvovsky

We present a comprehensive theoretical framework for calculating the linear and nonlinear optical responses of time-periodic quantum systems. Using density matrix evolution in the Floquet basis and adopting the length gauge, our approach…

材料科学 · 物理学 2025-03-10 S. Sajad Dabiri , Reza Asgari

Stochastic nonlinear dynamical systems can undergo rapid transitions relative to the change in their forcing, for example due to the occurrence of multiple equilibrium solutions for a specific interval of parameters. In this paper, we…

数据分析、统计与概率 · 物理学 2020-11-12 S. Baars , D. Castellana , F. W. Wubs , H. A. Dijkstra

In this paper, a computationally efficient data-driven hybrid automaton model is proposed to capture unknown complex dynamical system behaviors using multiple neural networks. The sampled data of the system is divided by valid partitions…

系统与控制 · 电气工程与系统科学 2023-04-28 Yejiang Yang , Zihao Mo , Weiming Xiang

I give an overview of rare event simulation techniques to generate dynamical pathways across high free energy barriers. The methods on which I will concentrate are the reactive flux approach, transition path sampling, (replica-exchange)…

统计力学 · 物理学 2015-03-17 Titus S. van Erp