软凝聚态物质
Lamellar or smectic phases often have an intricate intralamellar structure that remains scarcely understood from a microscopic viewpoint. In this work, we use molecular dynamics simulations to study the effect of volume exclusion and…
Understanding the three-dimensional (3D) structure and stability of DNA is fundamental for its biological function and the design of novel drugs. In this study, we introduce an improved coarse-grained (CG) model, incorporating a more…
Insects like dragonflies and cicadas possess nanoprotusions on their wings that rupture bacterial membranes upon contact, inspiring synthetic antibacterial surfaces mimicking this phenomenon. Designing such biomimetic surfaces requires…
In ABP systems, phase separation is accompanied by the emergence of vapor bubbles within liquid domains. Using large-scale particle-based simulations, we study the stochastic dynamics of these bubbles and find that most nucleate, grow, and…
Mechanical interactions among cells in a growing microbial colony can significantly influence the colony's spatial genetic structure and, thus, evolutionary outcomes such as the fates of rare mutations. Here, we computationally investigate…
Cavitation, the formation of vapor bubbles in metastable liquids, is highly sensitive to nanoscale surface defects. Using molecular dynamics simulations and classical nucleation theory, we show that pure water confined within defect-free…
Randomness plays a key role in the order transition of active matter but has not yet been explicitly considered in pairwise interaction connection. In this letter, we introduce the perception rate P into the Vicsek model as the probability…
We report on chute measurements of the free-surface velocity $v$ in dense flows of spheres and diverse sands and spheres-sand mixtures down rough inclines. These and previous measurements are inconsistent with standard flow rules, in which…
Granular materials in nature are nearly always non-spherical, but particle shape effects in granular flow remain largely elusive. This study uses discrete element method simulations to investigate how elongated particle shapes affect the…
Microfluidics offer remarkable flexibility for in-flow analyte characterization and can even measure the mechanical properties of biological cells through the application of hydrodynamic forces. In this work, we present a new approach to…
A random distribution of poroelastic spheres in a poroelastic medium obeying Biot's theory is considered. The scattering coefficients of the fast and the slow waves are computed in the low frequency limit using the sealed pore boundary…
Understanding crystal growth over arbitrary curved surfaces with arbitrary boundaries is a formidable challenge, stemming from the complexity of formulating non-linear elasticity using geometric invariant quantities. Solutions are generally…
This paper explores how competing interactions in the intermolecular potential of fluids affect their structural transitions. This study employs a versatile potential model with a hard core followed by two constant steps, representing wells…
Recent experimental advances in nanofluidics have allowed to explore ion transport across molecular-scale pores, in particular for iontronic applications. Two dimensional nanochannels -- in which a single molecular layer of electrolyte is…
The study of interactions between biomimetic membranes and micron-sized particles is crucial for understanding various biological processes. Here, we control microparticle spontaneous engulfment by giant lipid vesicles by tuning particle…
Recent flow cessation experiments on soft materials have shown a counter-intuitive non-monotonic relaxation of the shear stress: following the switch-off of a steady imposed shear flow, the stress initially decays before later increasing…
We use particle simulations to map comprehensively the shear rheology of dry and wet granular matter comprising particles of finite stiffness, in both fixed pressure and fixed volume protocols. At fixed pressure we find non-monotonic…
Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns…
Bioconvection is the prototypical active matter system for hydrodynamic instabilities and pattern formation in suspensions of biased swimming microorganisms, particularly at the dilute end of the concentration spectrum where cell-cell…
We investigate the crumpling of a sheet as it is repeatedly crushed onto itself by rolling it into a cylinder and twisting it axially while allowing the end-to-end length to evolve freely. As deduced from its plastic deformations, the sheet…