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The collection and use of personal data are becoming more common in today's data-driven culture. While there are many advantages to this, including better decision-making and service delivery, it also poses significant ethical issues around…

Cryptography and Security · Computer Science 2023-03-23 Constantinos Patsakis , Nikolaos Lykousas

Background: Clinical documentation represents a significant burden for healthcare providers, with physicians spending up to 2 hours daily on administrative tasks. Recent advances in large language models (LLMs) offer promising solutions,…

Computation and Language · Computer Science 2025-07-08 Johnson Thomas , Ayush Mudgal , Wendao Liu , Nisten Tahiraj , Zeeshaan Mohammed , Dhruv Diddi

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Accurate recognition of specific categories, such as persons' names, dates or other identifiers is critical in many Automatic Speech Recognition (ASR) applications. As these categories represent personal information, ethical use of this…

De-identification of data used for automatic speech recognition modeling is a critical component in protecting privacy, especially in the medical domain. However, simply removing all personally identifiable information (PII) from end-to-end…

Audio and Speech Processing · Electrical Eng. & Systems 2022-07-13 Martin Flechl , Shou-Chun Yin , Junho Park , Peter Skala

Privacy is a human right that sustains patient-provider trust. Clinical notes capture a patient's private vulnerability and individuality, which are used for care coordination and research. Under HIPAA Safe Harbor, these notes are…

Computers and Society · Computer Science 2026-02-10 Lavender Y. Jiang , Xujin Chris Liu , Kyunghyun Cho , Eric K. Oermann

Large language models (LLMs) have immense potential to make information more accessible, particularly in medicine, where complex medical jargon can hinder patient comprehension of clinical notes. We developed a patient-facing tool using…

Large Language Models (LLMs) are increasingly deployed in medicine. However, their utility in non-generative clinical prediction, often presumed inferior to specialized models, remains under-evaluated, leading to ongoing debate within the…

Electronic Medical Records (EMRs) contain clinical narrative text that is of great potential value to medical researchers. However, this information is mixed with Personally Identifiable Information (PII) that presents risks to patient and…

Computation and Language · Computer Science 2022-10-05 Leibo Liu , Oscar Perez-Concha , Anthony Nguyen , Vicki Bennett , Louisa Jorm

Large Language Models (LLMs) have revolutionized various sectors, including healthcare where they are employed in diverse applications. Their utility is particularly significant in the context of rare diseases, where data scarcity,…

Computation and Language · Computer Science 2024-08-20 Qiuhao Lu , Rui Li , Andrew Wen , Jinlian Wang , Liwei Wang , Hongfang Liu

Social telehealth has revolutionized healthcare by enabling patients to share symptoms and receive medical consultations remotely. Users frequently post symptoms on social media and online health platforms, generating a vast repository of…

Computation and Language · Computer Science 2025-02-04 Malak Mohamed , Rokaia Emad , Ali Hamdi

Named-entity recognition (NER) is fundamental to extracting structured information from the >80% of healthcare data that resides in unstructured clinical notes and biomedical literature. Despite recent advances with large language models,…

Computation and Language · Computer Science 2025-08-05 Maziyar Panahi

Removing personally identifiable information (PII) from texts is necessary to comply with various data protection regulations and to enable data sharing without compromising privacy. However, recent works show that documents sanitized by…

Computation and Language · Computer Science 2026-03-16 Sebastian Ochs , Ivan Habernal

Clinical notes contain an abundance of important but not-readily accessible information about patients. Systems to automatically extract this information rely on large amounts of training data for which their exists limited resources to…

Computation and Language · Computer Science 2020-04-23 Andriy Mulyar , Bridget T. McInnes

Protecting patient privacy in healthcare records is a top priority, and redaction is a commonly used method for obscuring directly identifiable information in text. Rule-based methods have been widely used, but their precision is often low…

In this study, we investigated the ability of the large language model (LLM) to enhance healthcare data interoperability. We leveraged the LLM to convert clinical texts into their corresponding FHIR resources. Our experiments, conducted on…

Computation and Language · Computer Science 2023-10-23 Yikuan Li , Hanyin Wang , Halid Yerebakan , Yoshihisa Shinagawa , Yuan Luo

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

Computation and Language · Computer Science 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

Identifying medication discontinuations in electronic health records (EHRs) is vital for patient safety but is often hindered by information being buried in unstructured notes. This study aims to evaluate the capabilities of advanced…

Computation and Language · Computer Science 2025-11-10 Chong Shao , Douglas Snyder , Chiran Li , Bowen Gu , Kerry Ngan , Chun-Ting Yang , Jiageng Wu , Richard Wyss , Kueiyu Joshua Lin , Jie Yang

Small and imbalanced datasets commonly seen in healthcare represent a challenge when training classifiers based on deep learning models. So motivated, we propose a novel framework based on BioBERT (Bidirectional Encoder Representations from…

Computation and Language · Computer Science 2020-06-23 Shijing Si , Rui Wang , Jedrek Wosik , Hao Zhang , David Dov , Guoyin Wang , Ricardo Henao , Lawrence Carin

De-identification is the task of detecting privacy-related entities in text, such as person names, emails and contact data. It has been well-studied within the medical domain. The need for de-identification technology is increasing, as…

Computation and Language · Computer Science 2021-05-25 Kristian Nørgaard Jensen , Mike Zhang , Barbara Plank
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